GgaEX0005615 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5521714-5527214:-
Coord C1 exon
chr15:5527099-5527214
Coord A exon
chr15:5523562-5523618
Coord C2 exon
chr15:5521714-5521840
Length
57 bp
Sequences
Splice sites
3' ss Seq
GATGTCTTTAATATTCCCAGGCA
3' ss Score
5.62
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GGTGGATACATGCGGTTTATACTCCAGTAGATTCTCTGGTGTTTGGTGGAAATATCCTGCATAGCTTTAATGTTCCCATGCAGCTTCGCATCTATGAAATTGAGGACAGAACAAGG
Seq A exon
GCATGTGGCTGAAAACCTTTTGAAGGCTGAGGGGTGGAAGGCGGCTTCCTGTTTTTT
Seq C2 exon
GTGCATGCCAAATTCCGTTATCCTTTCTACTATGAAATGTGCTGGTATGTTCTGGAGAGATACGTGTCCTGTGTGACCCAGCGCTGCCACCTCAGCAAAGAGTACCAGAAAGAATCAATGTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX1-2/13=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(12.3=100)
A:
NO
C2:
PF136211=Cupin_8=PD(3.6=25.6)
Main Inclusion Isoform:
ENSGALT00000006725fB604
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCAGCTTCGCATCTAT
R:
GGTACTCTTTGCTGAGGTGGC
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]