BtaEX0019228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33748788-33755284:+
Coord C1 exon
chr4:33748788-33748914
Coord A exon
chr4:33753926-33754104
Coord C2 exon
chr4:33755119-33755284
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTGTGTTTTGAAAGGAA
3' ss Score
7.01
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAAGTGTCCAGCAGGCACCTGTGATGGATGTACATTCTATTTCCTGTGGGAGAGTGTGGAAGCTTGCCCTCTGTGCACTGAACATGACTTCCATGAGATTGAGGGTGCCTGTAAGAGAGGATTTCAG
Seq A exon
GAAACTTTATATGTGTGGAATGAGCCTAAGTGGTGCATTAAAGGAATTTCTTTGCCTGAGAAAAAGTTGTCAACCTGTGAAACAGTTGACTTTTGGCTAAAAGTGGGAGCAGGAGTGGGAGCTTTTACAGCCGTTTTGCTGGTGGCTCTAACTTGCTACTTCTGGAAAAAGAATCAGAA
Seq C2 exon
ACTGGAGTACAAATATTCCAAATTAGTAATGACTACGAACTCAAAAGAGTGTGAACTCCCAGCTGCAGACAGCTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGAAGTTGTATACTCCAATAAACAGTCCCTACTGGGAAAACTCAAATCCTTGGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'29-33,'29-31,30-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGGGAGAGTGTGGAAG
R:
TGCCAAGGATTTGAGTTTTCCCA
Band lengths:
246-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development