GgaEX6000354 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8117711-8121544:+
Coord C1 exon
chr1:8117711-8117837
Coord A exon
chr1:8118532-8118710
Coord C2 exon
chr1:8121379-8121544
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTATGATTTCTATTTGAAAGGAA
3' ss Score
4.01
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTCATGCCCTGCTGGCACCTGCGATGGGTGCACTTTCTACTTTGTGTGGGAAAGTGCAGAAGCTTGCCCTCTGTGCACAGAGCAAGACTACCATGAGATCGAGGGAGCCTGCAAAAAAGGATTTCAG
Seq A exon
GAAACCTTGTATGTATGGAATGAGCCGAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGTGTGGGTGCTTTCGCTGCTGTTCTGCTGATAGCCTTGACCTGCTATTTTTGGAAGAAGAACCAGAA
Seq C2 exon
GCTGGAGTATAAATATTCCAAATTGGTGATGACAGCGAACTCAAAAGAGTGTGAGCTGCCAGCTGCTGACAGTTGTGCTATAATGGAGGGGGAAGATAATGAAGAAGAAATAGTATATTCTAATAAGCAGTCACTGCTGGGGAAGCTCAAGTCCTTGGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGAAAGTGCAGAAGCT
R:
TTGCCAAGGACTTGAGCTTCC
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]