BtaEX0019229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33731606-33754104:+
Coord C1 exon
chr4:33731606-33731707
Coord A exon
chr4:33748788-33748914
Coord C2 exon
chr4:33753926-33754104
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATGATTTATTTCAGCAA
3' ss Score
6.57
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTTCTACAACTACAACCTCTTGTGTAAATGGCCGATCAACTGCTGTGAAAATGAGGTGTAATCCTGCTAAACCAGGAGCGGGAGCCATTTCTGTCCCCAG
Seq A exon
CAAGTGTCCAGCAGGCACCTGTGATGGATGTACATTCTATTTCCTGTGGGAGAGTGTGGAAGCTTGCCCTCTGTGCACTGAACATGACTTCCATGAGATTGAGGGTGCCTGTAAGAGAGGATTTCAG
Seq C2 exon
GAAACTTTATATGTGTGGAATGAGCCTAAGTGGTGCATTAAAGGAATTTCTTTGCCTGAGAAAAAGTTGTCAACCTGTGAAACAGTTGACTTTTGGCTAAAAGTGGGAGCAGGAGTGGGAGCTTTTACAGCCGTTTTGCTGGTGGCTCTAACTTGCTACTTCTGGAAAAAGAATCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTGTGTAAATGGCCGA
R:
TAGCAAGTTAGAGCCACCAGC
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development