GgaEX6000355 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8115946-8118710:+
Coord C1 exon
chr1:8115946-8116047
Coord A exon
chr1:8117711-8117837
Coord C2 exon
chr1:8118532-8118710
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTGGTCTCCTCCTAGCTC
3' ss Score
6.78
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTCTTCAACAGCAACAACCTCTTGTGAAGATGGTCGTGCAACTGTTGTGACAATGAGATGCAACCCCAACAAGCCAGATCAAGGAGAGCTTTCTGTGCCCAG
Seq A exon
CTCATGCCCTGCTGGCACCTGCGATGGGTGCACTTTCTACTTTGTGTGGGAAAGTGCAGAAGCTTGCCCTCTGTGCACAGAGCAAGACTACCATGAGATCGAGGGAGCCTGCAAAAAAGGATTTCAG
Seq C2 exon
GAAACCTTGTATGTATGGAATGAGCCGAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGTGTGGGTGCTTTCGCTGCTGTTCTGCTGATAGCCTTGACCTGCTATTTTTGGAAGAAGAACCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGTGAAGATGGTCGTGCA
R:
TAGCAGGTCAAGGCTATCAGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]