HsaEX0034018 @ hg38
Exon Skipping
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109198573-109200237:+
Coord C1 exon
chr1:109198573-109198674
Coord A exon
chr1:109199854-109199980
Coord C2 exon
chr1:109200059-109200237
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCTGCTTTGCTAGAAC
3' ss Score
6.97
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCCAATGATGTGACCCAGTCCTGCAGTTCTGGGAGATCAACCACCATCCGCGTCAGGTGCAGTCCACAGAAAACTGTCCCTGGAAGTTTGCTGCTGCCAGG
Seq A exon
AACGTGCTCGGATGGGACCTGTGATGGCTGCAACTTCCACTTCCTGTGGGAGAGCGCGGCTGCTTGCCCGCTCTGCTCAGTGGCTGACTACCATGCTATCGTCAGCAGCTGTGTGGCTGGGATCCAG
Seq C2 exon
AAGACTACTTACGTGTGGCGAGAACCCAAGCTATGCTCTGGTGGCATTTCTCTGCCTGAGCAGAGAGTCACCATCTGCAAAACCATAGATTTCTGGCTGAAAGTGGGCATCTCTGCAGGCACCTGTACTGCCATCCTGCTCACCGTCTTGACCTGCTACTTTTGGAAAAAGAATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-'45-53,'45-52,46-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTGACCCAGTCCTGCA
R:
GTCAAGACGGTGAGCAGGATG
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development