DreEX0067005 @ danRer10
Exon Skipping
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23782273-23784540:+
Coord C1 exon
chr8:23782273-23782374
Coord A exon
chr8:23782910-23783036
Coord C2 exon
chr8:23784362-23784540
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCGCTGTGTGTAGTAA
3' ss Score
6.96
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTCTAGAGAAACTACACAAGCGTGCAAAAATGGAAGATCATCCTCCATTCGGCTGCGATGTGATCCCAGTGTTACAGTGAAAAACTATATTTCTCCACCAAG
Seq A exon
TAACTGCTCAGAGGGCACATGTGACGGCTGCTCTTTCCACTTCCTGTGGCGCTCACAGCAGGCCTGTCCTCTCTGCTCAGAAAGTAACTATAAGGAGATTGTCAGCGCCTGCATCCAGGGAATTCAG
Seq C2 exon
AGGACGACGTATGTCTGGCAGCAGCCTCTGAGGTGTACAGGCGGTGTGTCTCTGCCTCCTCTGAAGATCAGTACCTGCGTGACGCTCGACTTCTGGCTCAAGTTTGGGGTCTCCATTGGAACTGTGGCCGCCGTGTTGCTCATTACCATCAGCTGCTACTTCTGGAAAAGGACACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF053256=DUF730=PU(45.9=97.1)
A:
PF053256=DUF730=PD(52.7=90.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCCTCCATTCGGCTGC
R:
TGCGTGTCCTTTTCCAGAAGT
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]