MmuEX6073430 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108460939-108462991:-
Coord C1 exon
chr3:108462890-108462991
Coord A exon
chr3:108461196-108461322
Coord C2 exon
chr3:108460939-108461117
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTCTACTTTGCTAGCAT
3' ss Score
6.37
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATCCAATGATGTGACCCAGTCCTGCAGTTCTGGAAGATCAACCACCATCCGCCTCAGATGCAATCCAATGAAAGCTGCTCCTGGCACCCTGCGGCTACCCAG
Seq A exon
CATGTGCTCTGATGGGACCTGTGATGGCTGTAACTTCCACTTCCTGTGGGAGAGTGTGGCCGCTTGTCCACTCTGCTCGGCCTCTGACTACCACACTTTTGTCAGCAGCTGTGTGGCTGGGATCCAG
Seq C2 exon
AAGACTACTTACATGTGGCGAGAACCAAAGCTGTGCTCTGGGGGCATTTCCCTGCCTGAGCAGAGAGTTACCATCTGCAAAACGATCGATTTCTGGTTAAAAGTGGGCATCTCGGCTGGCACCTGCACTGCCATCCTGCTTACTGTCCTGACCTGCTACTTTTGGAAGAAGAATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-'34-31,'34-30,35-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCCTGCAGTTCTGGAAG
R:
AGCAGGTCAGGACAGTAAGCA
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types