RnoEX0072818 @ rn6
Exon Skipping
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21586026-21600283:-
Coord C1 exon
chr4:21600182-21600283
Coord A exon
chr4:21588316-21588442
Coord C2 exon
chr4:21586026-21586204
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTTTAAAATTTTAGCAA
3' ss Score
6.88
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTCTTCCACAGCCACCACGTCTTGTATTAATGGCCGATCGACTGCTGTGAAAATGCGATGTAATCCCATGAGACCTGGTGCAGGTGTGATATCGGTCCCCAG
Seq A exon
CAAGTGTCCAGCTGGCACCTGCGATGGTTGTACATTCTACTTCCTATGGGAGAGTGCGGAAGCTTGCCCTCTATGCACAGAGCATGACTTCCATGAGATCGAGGGAGCCTGCAAGAGAGGGCTTCAG
Seq C2 exon
GAAATCTTATATGTATGGAATGAGCCTAAGTGGTGCATTAAAGGAATTGCTTTGCCCGAGAAGAAATTGTCAACGTGTGAAACAGTTGACTTTTGGCTGAAAGTGGGAGCTGGTGTTGGGGCATTCACAGCTGTTTTGTTGGTGGCTTTAACGTGCTACTTTTGGAAAAAGAATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-'28-34,'28-33,29-34
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCACCACGTCTTGTAT
R:
AGCACGTTAAAGCCACCAACA
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]