BtaEX0019683 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15340894-15343946:+
Coord C1 exon
chr27:15340894-15341059
Coord A exon
chr27:15342779-15342954
Coord C2 exon
chr27:15343851-15343946
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTTTTCCCTCCTAGGCT
3' ss Score
10.76
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
TCTGTACAACAAAAAGGACACGCATTGTTGGAGGAACAAATGCTTCTTGGGGAGAGTGGCCCTGGCAGGTCAGCCTGCAAGTGAAGCAGAGAGCTCAGAGCCACCTGTGCGGAGGGTCAATTATTGGACGCCAGTGGGTCTTAACTGCTGCCCATTGCTTCGATGG
Seq A exon
GCTTCTCTTGTCAAATATTTGGCGCATTTATGGTGGCATTTTAAATCTGTCAGAGATAACGACAGAGACGTCTTTCTCACAAATCAAAGAGATTATTGTCCACCCAAATTATAAAATCTCAGAAGGCAGTCATGACATTGCCTTAATAAAACTTGAGGCTCCTTTGAATTTTACTG
Seq C2 exon
ATTTGCAAAAAGCAATATGCCTACCTTCCAAAGATGATACAAAACCAGTTTACACTGACTGTTGGATAACTGGATGGGGCTTCACAGAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=83.9)
A:
PF0008921=Trypsin=FE(25.5=100)
C2:
PF0008921=Trypsin=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACACGCATTGTTGGAGG
R:
CTCTGTGAAGCCCCATCCAGT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development