RnoEX6055598 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50169044-50172317:+
Coord C1 exon
chr16:50169044-50169212
Coord A exon
chr16:50170983-50171158
Coord C2 exon
chr16:50172222-50172317
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTGCTTCTCTCCTAGGAT
3' ss Score
11.04
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
ACTGTACGACAAAAATAAATGCACGTATTGTGGGAGGAACAAACTCTTCTTTAGGAGAGTGGCCATGGCAGGTCAGCCTGCAAGTAAAGTTGGTTTCTCAGAATCATATGTGTGGAGGGTCCATCATTGGACGCCAATGGATACTGACGGCTGCCCATTGCTTTGATGG
Seq A exon
GATTCCCTATCCAGACGTGTGGCGTATATATGGCGGGATTCTTAATCTGTCAGAGATTACAAACAAAACGCCTTTCTCAAGTATAAAGGAGCTTATTATTCATCAGAAATACAAAATGTCAGAAGGCAGTTACGATATTGCCTTAATAAAGCTTCAGACACCGTTGAATTATACTG
Seq C2 exon
AATTCCAAAAACCAATATGCCTGCCTTCCAAAGCTGACACAAATACAATTTATACCAACTGCTGGGTGACTGGATGGGGCTACACAAAGGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'13-18,'13-17,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=82.5)
A:
PF0008921=Trypsin=FE(25.5=100)
C2:
PF0008921=Trypsin=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTATTGTGGGAGGAACAA
R:
CTCGTTCCTTTGTGTAGCCCC
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]