BtaEX0019996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017395 | LASS5
Description
Bos taurus ceramide synthase 5 (CERS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001102132]
Coordinates
chr5:29932014-29935323:+
Coord C1 exon
chr5:29932014-29932170
Coord A exon
chr5:29933016-29933124
Coord C2 exon
chr5:29934412-29935323
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTCCCTGACCAGGTG
3' ss Score
10.86
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GATCCTGAACACGACCCTCTTTGAGAGTTGGGAGATAATCGGGCCCTATCGCTCCTGGTGGCTTTTCAATGGCCTTCTCCTGGTCCTACAGGTTCTGCATGTCATCTGGTCCTACCTAATTGCACGAATTGCTTTCAAAGCCTTGATCCGAGGAAAG
Seq A exon
GTGACCTATCCAGGAAGGATTAGACCCAGACTCTGTACTCTCCACTCTTTTCTCACCTCCTTCCTTTTTTCTATGCCTGGTGGGAGCTGGACAGTTTCATCTCTTGCAT
Seq C2 exon
GTGTCTAAGGATGATCGCAGTGATGTGGAGAGCAGCTCAGAGGAAGAAGATATAACCACCAGCACAAAAGGTCCCTGTGGCCGCAGCTCCAGCAATGGTGCCAATCGGGTGAATGGTCACATGGGAGGCAGCTACTGGGCTGAAGAGTAAGGTGGTTGGTATGGGGACTTCAGCATAGACGGACTTGCAGGGCCACTGGCAACCTACTCCTCTTGGGCCTCCCCACATCTACATTCCTGGGTCTAGGGGGTGTGCAGGGCACTGAGGAGAATCAAGAAGCAAATATTTTCACTTTTAAAAAAAACTCTGCCATTTCGTATTTAATAGCCTCCAGGTTCTTTCAGTAATGTTATTTGCTCTGTGTGTGCACGTGCGTGTGTGTGTGTGCGCGCCTGTGCATGTGCATTTGTGCATATGCGTGAGTCTTGTTGCCTAGGTTGGGGCACATTTCTGGACTAGGGCCATTAGGCCTTGCCTGGTCTCCTCTGAACCCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017395_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCTTCTCCTGGTCCTAC
R:
AGTCCCCATACCAACCACCTT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development