GgaEX0008798 @ galGal3
Exon Skipping
Gene
ENSGALG00000006184 | CERS5
Description
NA
Coordinates
chrE22C19W28_E50C23:259043-262659:+
Coord C1 exon
chrE22C19W28_E50C23:259043-259199
Coord A exon
chrE22C19W28_E50C23:260287-260389
Coord C2 exon
chrE22C19W28_E50C23:262002-262659
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTTCTCCTGTCCAGGTG
3' ss Score
11.36
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GATTTTGAATACAACCCTATTCGAAAGCTGGGAACTGATCGGTCCCTATCCTTCCTGGTGGCTGTTCAATGGCCTTTTGGTAACCCTGCAGATCCTACATGTCATCTGGTCCTATCTCATCGTTCGCACTGCCTACAAGGCCCTCGTGCGGGGAAAG
Seq A exon
GTGACCTAGCCAGAGAAGGGACTCTGAGCTTTGTCTTCTTCACTCTTTTTTCACTCCTTTTCCTCTGTGCCAGATTGGAGCTGGACAGTTTCATCCTTTGCAT
Seq C2 exon
GTATCCAAAGATGACCGCAGCGATGTAGAAAGCAGCTCTGAGGAGGAGGATGTGACATCCAACAGCACAAAAGGAGTTTTCAGCACTTCGAGCAATGGCTCCAACCGCATTAACGGCCACGTGGCCGGCGGGCAGTGGACAGAGGAGGAATAAGGCCCTGGGTTGGCCTTGAGCAAACACGAACTTGTCTCTGAATATTTAGATGTGTTGAACTCTGCATTCCCAAGTGATTTTTTTAATCAAGATACCCCTTCCCCAGAAACCTCCAGCAAATCTGAAACGGGCACAATCCAGACCAGTCAAAGGCTTGGCATGACAGAAGGGAGAAAGCCAATTACTAGGGCAAAAAAGCAAGCTGCAGATTTCACTTTAAGCCATTTTGTACTTCAATCTTAGCCCCATCAACGTTTGCAGAGGTATCTTTGTATGTGACAGACTGGTTTGGACTGGGATCAACTCAAGATGGAACGAGTTTGGGCTCAGCTGTCCCCTGACCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-'13-13,'13-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCTTTTGGTAACCCTGC
R:
CCAGGGCCTTATTCCTCCTCT
Band lengths:
250-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]