GgaEX0008797 @ galGal3
Exon Skipping
Gene
ENSGALG00000006184 | CERS5
Description
NA
Coordinates
chrE22C19W28_E50C23:257071-262659:+
Coord C1 exon
chrE22C19W28_E50C23:257071-257177
Coord A exon
chrE22C19W28_E50C23:259043-259199
Coord C2 exon
chrE22C19W28_E50C23:262002-262659
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTGGATCTCTTAGGAT
3' ss Score
9.13
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGCAAAGCTAGCCAATTATGCCAAGTACCAGCGTCTCTGTGATGCCTTCTTCATGCTCTTTGGTGTTGTGTTCATTGTCACACGCTTGGGCATTTATCCTTTCTG
Seq A exon
GATTTTGAATACAACCCTATTCGAAAGCTGGGAACTGATCGGTCCCTATCCTTCCTGGTGGCTGTTCAATGGCCTTTTGGTAACCCTGCAGATCCTACATGTCATCTGGTCCTATCTCATCGTTCGCACTGCCTACAAGGCCCTCGTGCGGGGAAAG
Seq C2 exon
GTATCCAAAGATGACCGCAGCGATGTAGAAAGCAGCTCTGAGGAGGAGGATGTGACATCCAACAGCACAAAAGGAGTTTTCAGCACTTCGAGCAATGGCTCCAACCGCATTAACGGCCACGTGGCCGGCGGGCAGTGGACAGAGGAGGAATAAGGCCCTGGGTTGGCCTTGAGCAAACACGAACTTGTCTCTGAATATTTAGATGTGTTGAACTCTGCATTCCCAAGTGATTTTTTTAATCAAGATACCCCTTCCCCAGAAACCTCCAGCAAATCTGAAACGGGCACAATCCAGACCAGTCAAAGGCTTGGCATGACAGAAGGGAGAAAGCCAATTACTAGGGCAAAAAAGCAAGCTGCAGATTTCACTTTAAGCCATTTTGTACTTCAATCTTAGCCCCATCAACGTTTGCAGAGGTATCTTTGTATGTGACAGACTGGTTTGGACTGGGATCAACTCAAGATGGAACGAGTTTGGGCTCAGCTGTCCCCTGACCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-'11-13,'11-11,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTACCAGCGTCTCTGTG
R:
CCAGGGCCTTATTCCTCCTCT
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]