MmuEX6056464 @ mm10
Exon Skipping
Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99734881-99739512:-
Coord C1 exon
chr15:99739406-99739512
Coord A exon
chr15:99738665-99738821
Coord C2 exon
chr15:99734881-99736436
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTCTCCTTGTTCTAGGAT
3' ss Score
12.31
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGCCAAGATGGCCAATTATGCCAGACGTGAGCGGCTCTGTACCACCCTTTTTGTGATCTTTGGCGCAGCTTTTATAGTTTCTCGTCTAGCAATCTTCCCATTGTG
Seq A exon
GATTCTGAACACAACCCTCTTTGAAAGCTGGGAGATTATTGGGCCCTACCCTTCCTGGTGGCTCTTCAATGCCCTTCTCCTGATCCTGCAGGTGCTCCATGCCATCTGGTCCTACCTAATTGTCCAGACTGCTTCCAAAGCCTTGAGCCGGGGAAAG
Seq C2 exon
GTGTCTAAGGATGACCGCAGTGATGTAGAGAGCAGCTCAGAGGAAGAAGATGAGACAACCCACAAAAACAACCTCTCTGGCAGCAGCTCTAGCAATGGTGCCAACTGCATGAACGGCTACATGGGAGGCAGCCACTTGGCTGAAGAGCAGGGGACTTGTAAAGCCACTGGCAACCTACATTTTAGGGCCTCCCCACATCTACACTCCTGTGACTAGAGGGACTGCAAGGCACTGAGGAGAATCAAAGAAATATTTTTGTGTTTTAAAGAAACTCTGCCGTTTTGTATTTAATGCCCTCTGGTCCTTTCAGTAAGGTTATTGGCTCTGTGTTTGTGTGGTTTTTGTGTGTGATTATACATGTGTATTGTGCATATAAATGAGTTTCATTGACTCGGTTGGGGCACAATTCTGGATTACTAGTCATTGTCTGGTCACTTCTGAGCCCACCTCAAGTCCAGCCCTGGCTGCATCTTGAATTAAGCTGTCTCCAGACCATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021-'25-32,'25-27,29-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(6.4=13.5),PF0379811=TRAM_LAG1_CLN8=FE(42.4=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATTATGCCAGACGTGAGCGG
R:
GGCTTTACAAGTCCCCTGCTC
Band lengths:
257-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types