DmeEX0009360 @ dm6
Exon Skipping
Gene
FBgn0040918 | schlank
Description
The gene schlank is referred to in FlyBase by the symbol Dmelschlank (CG3576, FBgn0040918). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is X:6257668..6267228. Its molecular function is described by: N-acyltransferase activity; DNA binding; sphingosine N-acyltransferase activity. It is involved in the biological process described with: SREBP signaling pathway; triglyceride metabolic process; negative regulation of lipid catabolic process; positive regulation of lipid biosynthetic process; ceramide biosynthetic process. 30 alleles are reported. The phenotypes of these alleles manifest in: prothoracic gland; terminal bouton; wing; endosome; trichogen cell. The phenotypic classes of alleles include: visible; lethal; increased mortality during development; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages.
Coordinates
chrX:6257668-6259234:-
Coord C1 exon
chrX:6258897-6259234
Coord A exon
chrX:6258650-6258794
Coord C2 exon
chrX:6257668-6258506
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATCCTGATAAACCCGGCAGCTC
3' ss Score
2.8
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCGATCAGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTCACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGATGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTGTGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGCTGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGAAGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGTGTGGATTGTTACGCGTCTGGGCTTCTATCCACGCATCATTTATAG
Seq A exon
CTCATCCGTGGAAGCACCGCGCATTCTGCCCATGTTCCCAGCCTACTACATCTTCAACTCACTGCTTCTGATGCTGCTCGTCCTGCACGTCATCTGGACATACATGATCCTCAAGATTGTTGTCGACTCTCTGCAGAAGGGTCTG
Seq C2 exon
ATGTCCGGTGACATACGTTCCAGTGATAGTGAGGATCTCACAGACAGTTCGGGGAATGCACGTCTGACCAATGGCTCGGCGCGCTCCAAGAACAAGTCGATCAGCAGTGCGCCATCGGATAAAGGATCTGCCGGAGGAGCAGGATCAAGAGCAGGAGCAAGAGTTGCGACAACGGAACGGAGAGAGGAGTAGCTGAGACACCAGTACCACTAGTAGGGGCCACACTTCCCGGGAGCAGGCGCAGCAACAACAGCAAACAAACAAAATCCACACACACCCCAAAAAAGCACACACCACGAACACACACACCACACACACTCACGCACACAGACGCATACAAAAAAACCAAACCAGTTCAGAATGTTTTTATGTTATTATTTTTTTTTATATATACATCTTTTTTAAGGTAAACAAAAAAGAAAGAAACAAATCGAAAACCAAAAGAAATTTAAATAAATGCGAGAAAATTGATGCGTAACGATTCGCTTGTACATCGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0040918_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.698
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(58.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(19.7=77.6)
C2:
NO
Main Inclusion Isoform:
FBpp0070898

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0070899
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACATGGTCACCCTGCTC
R:
CACTGGAACGTATGTCACCGG
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)