DreEX6038605 @ danRer10
Exon Skipping
Gene
ENSDARG00000053583 | cers6
Description
ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
Coordinates
chr9:49181647-49183261:-
Coord C1 exon
chr9:49183155-49183261
Coord A exon
chr9:49182315-49182471
Coord C2 exon
chr9:49181647-49181670
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGAAATTTGTGTGTTTGCAGGAT
3' ss Score
9.17
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTGCTAAGATGGCGAACTATGTGAAGTGCCAGCGTCTCTGCCCGCTGCTCTTCGTCATGTTCGCACTGGTCTTCATGGGCTCCAGACTGGCACTTTACCCTGTGTG
Seq A exon
GATCTTGAACACCACAGTGTTTGAGAGCTGGGAGATCATAGGCCCGTACCCGTCCTGGTGGCTCTTTAACGGACTGCTCGTTCTTCTTCAGGCGCTGCACACCTTCTGGTCATATCTAATAGTGCGCATCGCCTGCCGGGCCATTTCCAGAGGAAAG
Seq C2 exon
GCAGGAAAATGGAATCCTTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053583-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTAAGATGGCGAACTATGT
R:
TGTAAAGGATTCCATTTTCCTGC
Band lengths:
130-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]