RnoEX0020323 @ rn6
Exon Skipping
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141386934-141390330:-
Coord C1 exon
chr7:141390224-141390330
Coord A exon
chr7:141389475-141389631
Coord C2 exon
chr7:141386934-141387772
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTCTCCTTCTTCTAGGAT
3' ss Score
12.92
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGCCAAGCTGGCCAATTACGCCAGACAGGAGCGGCTCTGTAACACCCTCTTTGTGATCTTTGGTGCAGCTTTTATGGTTACTCGTCTAGGGATCTTCCCTTTGTG
Seq A exon
GATTCTGAACACAACCCTCTTTGAGAGCTGGGAGATTATTGGGCCCTTTCCTTCCTGGTGGCTCTTCAATGGCCTCCTCCTGATCCTACAGATGTTGCATGTCATCTGGTCCTACCTAATCGCACGAACTGCTTTTAAAGCCTTGGTCCGGGGCAAG
Seq C2 exon
GTGTCTAAGGATGACCGCAGTGATGTAGAAAGCAGCTCAGAGGAAGATGAGACCACACACACGAACAACCTCTCTGGCAGCAGTTCCAGCAACGGTGCCAACTGCATGAACGGCCGCATGGGAGGCAGCCACTTGGCTGAGGAGCAGGGGACTTGTAAAGCTGCTGGCAACCTACACTTTGGGGCCTCCCCACGTATACACTCCTGTGACTAGAGGGACCGCCAGGCACTGAGGAGAATCTGAGAAACAAATGTTTTTGTGTTTTAAAGAAACTCTGCCATTTTGTATTTAATGCCCTGGTCCTTCAGTGACATCACTGGCTCTTTGTCTGTGTGTCTGTGCGTCTGTACATGTGCATCATGCATGTGGATGAGCGTCATCCACTAGGTTGGGCACAAGGCTGGATTACTAGTCAGTGTCTGGTCACTTCTGAATCACCTCCGGTCCAGCGTTCGCTGTATCTTGAGTTAAGCTGTCTCCCAACCAGCTGTGTCCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATTACGCCAGACAGGAGC
R:
GCTTTACAAGTCCCCTGCTCC
Band lengths:
255-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]