BtaEX6020748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017395 | LASS5
Description
Bos taurus ceramide synthase 5 (CERS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001102132]
Coordinates
chr5:29931094-29933124:+
Coord C1 exon
chr5:29931094-29931200
Coord A exon
chr5:29932014-29932170
Coord C2 exon
chr5:29933016-29933124
Length
157 bp
Sequences
Splice sites
3' ss Seq
CATTGAACTTCCTCTTATAGGAT
3' ss Score
9.91
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCAGCCAAGCTAGCCAATTATGCCAAGTACCAGCGTCTCTGTGACACCCTTTTTGTGATCTTCAGTGCTGTTTTTGTGGTGACTCGCCTAGGAATCTATCCATTCTG
Seq A exon
GATCCTGAACACGACCCTCTTTGAGAGTTGGGAGATAATCGGGCCCTATCGCTCCTGGTGGCTTTTCAATGGCCTTCTCCTGGTCCTACAGGTTCTGCATGTCATCTGGTCCTACCTAATTGCACGAATTGCTTTCAAAGCCTTGATCCGAGGAAAG
Seq C2 exon
GTGACCTATCCAGGAAGGATTAGACCCAGACTCTGTACTCTCCACTCTTTTCTCACCTCCTTCCTTTTTTCTATGCCTGGTGGGAGCTGGACAGTTTCATCTCTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017395-'15-13,'15-11,18-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCAAGCTAGCCAATTATG
R:
GAGATGAAACTGTCCAGCTCCC
Band lengths:
210-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]