GgaEX1014933 @ galGal4
Exon Skipping
Gene
ENSGALG00000006184 | CERS5
Description
ceramide synthase 5 [Source:HGNC Symbol;Acc:HGNC:23749]
Coordinates
chrLGE22C19W28_E50C23:280507-286678:+
Coord C1 exon
chrLGE22C19W28_E50C23:280507-280613
Coord A exon
chrLGE22C19W28_E50C23:282479-282635
Coord C2 exon
chrLGE22C19W28_E50C23:285437-286678
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTGGATCTCTTAGGAT
3' ss Score
9.13
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGCAAAGCTAGCCAATTATGCCAAGTACCAGCGTCTCTGTGATGCCTTCTTCATGCTCTTTGGTGTTGTGTTCATTGTCACACGCTTGGGCATTTATCCTTTCTG
Seq A exon
GATTTTGAATACAACCCTATTCGAAAGCTGGGAACTGATCGGTCCCTATCCTTCCTGGTGGCTGTTCAATGGCCTTTTGGTAACCCTGCAGATCCTACATGTCATCTGGTCCTATCTCATCGTTCGCACTGCCTACAAGGCCCTCGTGCGGGGAAAG
Seq C2 exon
GTATCCAAAGATGACCGCAGCGATGTAGAAAGCAGCTCTGAGGAGGAGGATGTGACATCCAACAGCACAAAAGGAGTTTTCAGCACTTCGAGCAATGGCTCCAACCGCATTAACGGCCACGTGGCCGGCGGGCAGTGGACAGAGGAGGAATAAGGCCCTGGGTTGGCCTTGAGCAAACACGAACTTGTCTCTGAATATTTAGATGTGTTGAACTCTGCATTCCCAAGTGATTTTTTTAATCAAGATACCCCTTCCCCAGAAACCTCCAGCAAATCTGAAACGGGCACAATCCAGACCAGTCAAAGGCTTGGCATGACAGAAGGGAGAAAGCCAATTACTAGGGCAAAAAAGCAAGCTGCAGATTTCACTTTAAGCCATTTTGTACTTCAATCTTAGCCCCATCAACGTTTGCAGAGGTATCTTTGTATGTGACAGACTGGTTTGGACTGGGATCAACTCAAGATGGAACGAGTTTGGGCTCAGCTGTCCCCTGACCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-'13-22,'13-18,15-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTACCAGCGTCTCTGTG
R:
CCAGGGCCTTATTCCTCCTCT
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]