GgaINT1009237 @ galGal4
Intron Retention
Gene
ENSGALG00000006184 | CERS5
Description
ceramide synthase 5 [Source:HGNC Symbol;Acc:HGNC:23749]
Coordinates
chrLGE22C19W28_E50C23:282479-286678:+
Coord C1 exon
chrLGE22C19W28_E50C23:282479-282635
Coord A exon
chrLGE22C19W28_E50C23:282636-285436
Coord C2 exon
chrLGE22C19W28_E50C23:285437-286678
Length
2801 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATCTCACTTGGATTGTTCAGGTA
3' ss Score
5.86
Exon sequences
Seq C1 exon
GATTTTGAATACAACCCTATTCGAAAGCTGGGAACTGATCGGTCCCTATCCTTCCTGGTGGCTGTTCAATGGCCTTTTGGTAACCCTGCAGATCCTACATGTCATCTGGTCCTATCTCATCGTTCGCACTGCCTACAAGGCCCTCGTGCGGGGAAAG
Seq A exon
GTAAGGTGTTGGGGGCTGGTTTGGGTCCCCTTTTCTACAAGCTCTGTGAAGGAATTATGAAAAACTGGGCCATAAACAAGGGCTGGTGCTAGTTCTCAAGGTAATTGCATCACGACTGCTTTGTAGAGCAGTTGGTTCCTTTTTTTTTTTTTAACTCTGTTTGCTCTGCAAACCAGATCTACCAAATACATTCAGAGGCAGGGATGCTTCCCTCTTTGTTCTGTTCATGCAAGGAAACTCCACCATTTTCCAGTACACTGAGATATGATGATGACTGATTTGTTACATGCTTTCCTTGGAGTTCAAGGTGGTAGAAGGCTCACTTTCAAATAATCATTTAGGATGTCTTTTAGCTCCTAGCTTTCCAATATCTGCTGATTCTTGGGTTACGCTGAGAATTACGCATCTTCCCTTCTAGCAGTGAACGGCTTCTGGCTGCCAGTGGGAGCCAGGCATTGAGCTACAGAAGCAAAAGATTCTCAGAAGTACTGGGGAGCAAGCTGGTTGTCACTGGGCTAATGGGGTACAGTCTAGCTCTAGTCCTAAGTATTCCGATTTTAGTCGGGGGGGGGGGGGGCTATGGGGAGGGAGGGTTGAGACTCCAGCAGCTGATAAATGGCAGATGTTATCCTAAGAGCAAACAGTGCTGATGTTTGGCTGTAGCCGAAGTTGCCAGGCTTAAAAGCTGCACTTCAACTGGAGGTGTGAGACAGGGCAAGCAGCCTAGGAACTGATTTGACACCCAGCCAGCCACTTCAGAAGCCACTTCCTTTGCATCTACCAGAGCGCAACAGATGGTTTGCTAGCACAAATGTCTTTTTTGTCATCTATCTGATATCTTGATCTGAGTTTCTCTCACAGCTATACTTTGTGTTTGACTTCTTAGCTGCCCACACATGAAATGTAACCTTGAAATACATATCTGTTTGTGGCAGTGTTTGTCAGGGGAGAATGTATTTTAGAGCATGCACATGAGTTTGTCATCTGTTCCCCACAACTGCTACTGCGAGGCTCTTATTTTCTATGCAGCTGTTCCTACAGCTGAGGTCTGTGTCTTTTCCCTTTCCTTGCTTTTCTCCTGTCCAGGTGACCTAGCCAGAGAAGGGACTCTGAGCTTTGTCTTCTTCACTCTTTTTTCACTCCTTTTCCTCTGTGCCAGATTGGAGCTGGACAGTTTCATCCTTTGCATGTAAGTGTGATCTGTACTTCTGTTTCTACCCTGTTTCTAGGCTGAGGGGAAACATAAAGCTCTGGTCCTGGGGCTTCAGCTTGATGGTGCCTTCTCTTAAAATGTTTTTTTCCCTGGCTGATGCAGTGCTGGCCCTGATCCAGTTTTAAAATGCAGATTCTCCAAAGGTCTGAGCAGTGTCCTGTGGCTTGTTCTGATGTCTTCACCTGTATGATTTGTAGGCTTACAAAGACTCTGATGTTTATGTCTGTAGTGCTCATTAACACTCTGCTGAGTGAAAAAGGACAGCAGAAAAGCAATCCTTTTTGTGAAAAGGATTACAACAGTTATGGGAAGAACGTTGAGAGATCTCTGCCTCCTTCCAGTGACCCTTTGAACTTCCAGTATAGGAAGAGAGTAGGGAAGGGTACCAGAAGTTCTGGCTACAGACAAAAGCAAGTACATCCAACAGGCCCATCAAAACCCATCCCGGGGATCATTAACTTTATCTGGCTTTCTACCACATCTTCCTTGGAGCTGAAACCTTCCCATCAGGTGCTGCTTGAAAGCCAGAACCCAGGCACAGAACAGGCAGAGCAGGATCAAATCCTGAAGCACCTGAAAGCAATCTCCCCACAAAGTGGTTGCACATGAGGTGAATGAGGAGTGTTAGCTGCAGACAAAAGTGTGGAGAGCCTGCCCTAGGGGAGCTATTCGTGTATCCAGATGGCACTGGTGAGTTTATGGCTCTGGAGCCCAGCCAGCCACCAACGTGCTTATTTGCAGTTGGGGCTGGGCTTATGGTCCCTTTTGTGTCCTGGTGCACTGCGCTTCCATGGCACTCCCACAGCAGGTAGCAGTGATGTGTACCAGAGCTGTGCCTTAGTGTTGTTCCAAAGGTTCAAAACCCCACATACACACGGCATTGGCTGACTTTGTAGTCACCTTATAGCCAAAGCCATAACCATAGGGCAGTTCCCCATACGGTGGAGATGCTTCTTCAGCTCCTGGGCTGGTGTTAGGTCGTTGTCTCTGTTCTGCAGCCTGCTGCTCGACTGTGCTGCTCCTTGTAAATGAGTTCTCACAGATGAATGACAAGCAGTGAAAATGGGAGGCACTTTGTGCAAACAGTAATGTGATAAATATAGCTGGTTAATTTTTAAAATATCAAAGGCAGTCCCTGCAGGACAAAGTGTTCTTTCCAGAACTGATAGATATGTATTTTGTCATTGTATTTGCTGATTATTATGGTGTGAGAAGAATTATTGTTGTTATTGAAAACAAATTTATCTGGAAAAGCAGCCTTTAACCAGTCTAGAATGCAACTCTTGGAAGACAAAAGCAAGCCAAGATCTCTGGCATCCTCTGATGCGGTGAGCATGAAGTGTGGTGCCTCACAGTGTACAGTGCTTGGAAAACAGAGCTCCTAATTCCCAGCTGTCTTTTTCTAGATCTGTCTTGTGTTCTGCATGTGATGACTGGCTCTTTAAGCTCTAAGTTAATAAGGGTGGAGTACAGAAGGCAGCTGTCACTGGGGCTGGTTAATCCCTTCAATACAACCTTCTGCTGTAACTTTGTGTGAATTTACCAACTTCTCCCCTTTCCACTACCAAATCTCACTTGGATTGTTCAG
Seq C2 exon
GTATCCAAAGATGACCGCAGCGATGTAGAAAGCAGCTCTGAGGAGGAGGATGTGACATCCAACAGCACAAAAGGAGTTTTCAGCACTTCGAGCAATGGCTCCAACCGCATTAACGGCCACGTGGCCGGCGGGCAGTGGACAGAGGAGGAATAAGGCCCTGGGTTGGCCTTGAGCAAACACGAACTTGTCTCTGAATATTTAGATGTGTTGAACTCTGCATTCCCAAGTGATTTTTTTAATCAAGATACCCCTTCCCCAGAAACCTCCAGCAAATCTGAAACGGGCACAATCCAGACCAGTCAAAGGCTTGGCATGACAGAAGGGAGAAAGCCAATTACTAGGGCAAAAAAGCAAGCTGCAGATTTCACTTTAAGCCATTTTGTACTTCAATCTTAGCCCCATCAACGTTTGCAGAGGTATCTTTGTATGTGACAGACTGGTTTGGACTGGGATCAACTCAAGATGGAACGAGTTTGGGCTCAGCTGTCCCCTGACCATGGTTGGTGAATGCACTGCCAGTGATGACGGCTCATTCAACGCGGGGTCAGCATCGTCTCCTTGGTGCACTTCATAAGCTGCTCAGAGCATGGGGAGTGCCTGGTTTTGTGCTTCCCGTGTACAGGCTGCAGCAGACTCATCCCTCTATGCTACAGCCAAGCTCTGTGTTGCATTGTGCTCCAACTTCTCTGGGGTGCTCTGTGCTAAGGAGGCTATAGCTTGTTAACTCTGCTCTCAGGAGGGACCAGGCCAGCGTTTGCTGCCTCTTCTGGTGCTGAAAGCCCCTCTGAAGCCTCAGTGACAGCCGTCTGAAACAGGGGAGGGGATTCCTTATTGCCCCTAAGACAAGTATCACAATATGTACCTTTTAAATCTTTTTTTTTTTTTTTTCCTTTTGCAAGTTGTGGTTTTGAAGACATTTCTAGATCTACTGGATGCAGATGGCTGAGCGAGGGACTTGAGGGCAGACCAATGCTGGGGGTTGTTCTCAGCTTTCCACATAATAAGGGGTTTCAGTCCTGCTCAGCTGTATTTCAGGACAGATGTTAGAATGGTGCTGCTCTCATTCTGCAATTGTGGAGGAAATCACTGGGCTGGAAAAGCAGCCACACTGTGGGCTCTGCTTCTTTTTTCACTCGATGGTACTTGGGGGCAATGGAGGACCTGCATGTCAGTCACGAGCAGAATTTTGGAAATTTCTTGAGTTGCTACCATTTTATACTGTTGTTTACTCTTATCTCGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184:ENSGALT00000009980:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]