MmuINT0090069 @ mm10
Intron Retention
Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99735592-99738821:-
Coord C1 exon
chr15:99738665-99738821
Coord A exon
chr15:99736437-99738664
Coord C2 exon
chr15:99735592-99736436
Length
2228 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTGGTCCTGTCCCCCTCAGGTG
3' ss Score
10.88
Exon sequences
Seq C1 exon
GATTCTGAACACAACCCTCTTTGAAAGCTGGGAGATTATTGGGCCCTACCCTTCCTGGTGGCTCTTCAATGCCCTTCTCCTGATCCTGCAGGTGCTCCATGCCATCTGGTCCTACCTAATTGTCCAGACTGCTTCCAAAGCCTTGAGCCGGGGAAAG
Seq A exon
GTAAGGATGAAGCATCCTTCTTTGTTTGGACCATGTGGGAACACAGGTTTGACTTTGCAGACCTCTGCCCAGCCTGGGAGCCTCAGCTACACAAGGAGGCTCGGGATGTAGCCCAGTCACCATAAAGCTGCAGGAAGCCCTGAGTTTGATACCAGCACCAGCACGATGGCGTATGTATACCTGTAAACCCTGTGCTAAGGAGATGAAGCAGGAAAATCACAAGTTCGGGTCATCCTTTGCTAAATAATAAGTGTGAGGCCATCCAGGAATACTTGACCAAAAATAATAATAAAAGGGTGGCTATTGATGTGTAGCTGAGCATACAAACTGGCAAGCCTGAGGAATGGTGTGGTAGTCTTTTTTTGTTTGTTTGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGAGCGCCACCACACCCGGCTGTGGTAGTCTTCTAGTTAAGCTAAATCAACTTTGCTGTGACGCACAGGATCGGTTTCTAAACATCTGCCTCACTATTTTTAAGCAAGAGTCTTTAGTGAAGTTTTAGTGCAAAAGTCACAAAGATACTCATCTTTTAAGACAGTGTTGGAAGCTGAGTCCAGGGTCTCATGCCTTCTGACTAGCTAATTCTAGCCCTACGGGGGTGTGGGGGCAGACATTTAGTGATAGAACATAATTGAAATTTGCAAGTTCTAAAGCAGTCATACTGGATCAAGGCAGAAAGCTGTCAGTTGTGCAGAATCCCAAGTGGGATAGGCTCTATTAGAGATGCTAGTTCCAGACTGCACAATGGATGTTGCCTGGTTATTTATTATCTCTCTTGTCATTGTTCTTGATGGCTATAATTCGTTTCAGAACTTGTGTGATGTGCCTGTGCATCTTATAGCTACTGGACATCTCTCTTTTCCCCTGCGTTTCTCTCCTGACTAGGTGCTCTCCCAGGAGGGATTAGACCCAGGCTCTGTACCTTCTGCTCTTTCTCACCTCCTTCCTCTTTTCTCTGCCTGGTGGCAGCTGGACAGTTCCATCCTTTGCATGTAAGTGCATCTGGCTTCTAGTGTTGAGAGAAGCACCTGTCTGAACAGCTCTCCTTCCAGCTGTACTTCCTGGTCCCATCTGCCTTAGAACGTGTTCGCCCAGCTAACGTATGTGACTGTTGTTGACTGGAGCTGAGATTACCAGATTCCTTCCCCAAATGAAGTCTAGGCTATAATGTGGTTTGCTTTTGAGCCTCTACCTCACCTACTCTGGAGATATCCCTAGCCCTCTGGAAATTCCCTAGACATTCTGAATTGAGAGTCAACAGCTATAGTCAACTGCAGAGTCACATAACATCTAAAGCAAATGTCCTTCCTTTATAACAACAGCTGGAGCCATGTTCCTTCCCTACTAATGCTCTTTAAATGACATGCATCTGTCACTGTTTGTATGTTGCAGGGGTCATCATCCTAACACACATGTCACTGGGCTTTCTTTATTTTTATGGCCCAATATAGAGAATTTGAAACATTCTGATATGCAGGGTCTCATTGGAAACTGCCACCGTAATCCTAACCTCTCATTGAAAACACAAAACAAAAGCATGGGTAAACGGCAAAGCCGCGGTGTCGGTAGAGCTGGGAAGGCTCAGCTCTCCACGCTGACGCCCACACTCCTGACTATATTTATAGTGTCCTGGGGGTGCCAGAACTCCATGTTGAGGCCAGAGATAGCAGCACCAGGGTAAAGAACTGAGTGCCCACGGTGATCAGCAGATGGAGCCACGACGGCATTCCTGTGTATCGCTTGTGTGGCTTCCCCAGTTCTGTGGTGAAGAGGGAAGAAGTGCTGGAGTTTTCCTCACAACTAAACATGGACTCAGTGTGGCATCACAGCAGCCTTTCTGGTATAGAATGGCATAAATGAAAGCAAAACAGGAAGCAGGCAAACTCTGTTCACAATCACAGCCAGTGACACAGAAGCATTTAAGTCAGTGTCACCGAACCTAGAAACAGGTACACGAGTGGGCTTTCCTAGGCTCTGAGACTCATCTGCCCCGTGAGTCCTAGAAACAGGTACACGAGTGGGCTTTCCTAGGCTCTGAGATCCACCTGCCCCGTGAGTATGAAACGTAGCGTGTGTACTGCATTTGGTCCTGTCCCCCTCAG
Seq C2 exon
GTGTCTAAGGATGACCGCAGTGATGTAGAGAGCAGCTCAGAGGAAGAAGATGAGACAACCCACAAAAACAACCTCTCTGGCAGCAGCTCTAGCAATGGTGCCAACTGCATGAACGGCTACATGGGAGGCAGCCACTTGGCTGAAGAGCAGGGGACTTGTAAAGCCACTGGCAACCTACATTTTAGGGCCTCCCCACATCTACACTCCTGTGACTAGAGGGACTGCAAGGCACTGAGGAGAATCAAAGAAATATTTTTGTGTTTTAAAGAAACTCTGCCGTTTTGTATTTAATGCCCTCTGGTCCTTTCAGTAAGGTTATTGGCTCTGTGTTTGTGTGGTTTTTGTGTGTGATTATACATGTGTATTGTGCATATAAATGAGTTTCATTGACTCGGTTGGGGCACAATTCTGGATTACTAGTCATTGTCTGGTCACTTCTGAGCCCACCTCAAGTCCAGCCCTGGCTGCATCTTGAATTAAGCTGTCTCCAGACCATCTGTGACCTCGTCCCATGGCTCTTGAGACTCTGGGTTCCTGATCACTTAAATAAGTGCTGTCACCAGACTCAGCTCCAGGACTTGAAAATTGTTCTTTTGGAGGAGGAAGTAATATTTCACCTGATGGAACACTACCCAGGATCAACATAGCTCCTAGCTACATGTCCCCTTCCTATCACCTGCTAGTGGCAGGGACAACTACATACCCTGCTGCTTATTTAATGGTATGCAGGGAGGGGGAGGGTAGGAGAGGATGAGCTGAGATTTGGAGAGCAGCAGCCACTGGTTGCGCTGTTAATGATTTTATACTATTGCTTATTCTTCTGTGATTAAATTGTTTCAACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021:ENSMUST00000023762:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types