RnoINT0034898 @ rn6
Intron Retention
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141386934-141389631:-
Coord C1 exon
chr7:141389475-141389631
Coord A exon
chr7:141387773-141389474
Coord C2 exon
chr7:141386934-141387772
Length
1702 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTCGTTCTGTCCCACTCAGGTG
3' ss Score
9.67
Exon sequences
Seq C1 exon
GATTCTGAACACAACCCTCTTTGAGAGCTGGGAGATTATTGGGCCCTTTCCTTCCTGGTGGCTCTTCAATGGCCTCCTCCTGATCCTACAGATGTTGCATGTCATCTGGTCCTACCTAATCGCACGAACTGCTTTTAAAGCCTTGGTCCGGGGCAAG
Seq A exon
GTAAGGAGGAAGCAGCCTACTTTCTTTGGACCATGCAGAAACATGGCTCTGACTCTGCAGACGTCTGCCCAGCCTGGGAGCCTCAGCTACACAAGTAGGCTAGGGTGCAGCTCGGTCACCATGATGTAATGCCGAGGGAATGCTGAGTTTGATACAGAACCAGCACGGTGGCCTACGTATGCCTGTTACCCCTGTGCTAGGGAGATGGAGCCGGAAAATCACAAGTGCAGGTTGTCCTTTGCTGCCTGACAAGTCTGAGGCCATCCTGGAATACTTGGCAAAAAACAAAAGGGTGGCCGTTGATGTGGAGCTGCAGATGCAAACTGGAAAGCCAGAGGGTTGGGCTGTCTAGGAATGATGTAAAAGTCTCTAGTTAAGCGAAGGCAGCTTTACACAGGATTGGTCTCTAAACATCTGCCTCACTCACTGGTTGAAGCCAGAGTCTTCAATAAACACTGAAGTGTTATATGTTTTAGTGCAAAAGTCACAAAGATAGCCCTGTCTTTTAAGACAGTGTGGAAAGCTGAGCCCGGGGTCTCATGCGTTCTGTCTAGCTAGTTCCATCCCCGAGAGGGGCCATTTAATCTAGAACATAATTGAAATTTGCAAGTTCTAAAGCAGTCACACTGGATCAAGCCAGAAAGCTGTCAGTTGTGCAGAGTCCCAAGTGGGATGGTCTCTCCAGACCGCACGCACAATGGGTGTAGCCTGGGTATTTATTCTCTTGTCATTGTTCTTGATGGCTGTAATTGGTTTCAGAACTTGTATGTGTGCCTGGGCATCTTGCAGCTACTGGACATCTCTCTTCCTCCCTGCGTTTCTCTCCTGACTAGGTGACCTACCCAGGAGGGATTAGCCCCGGCTCTGTACCCTCTGCTCTTTTCTCACCTCCTTCCTCTTTTCTATGCCTGGTGGCAGCTGGACAGTCCCATCCTCTGCATGTAAGTGCACTTCTGTGCTTCTGGTGTTGAGAAGCACCTGTCTGAACGGCTCTCCCTCCAGCTGTACTTCCTGTCCCATCTGTCTTAGAATGTGTTCACTCACCTAACCTACGTGACTGTTGTTGACTGGAGCTGAGGTGACCAGATTCCGTCCCCAAATTAAGTCTAGTCTGTAATGTGGTTTGCCTTTGAACCTGTCCTTACGTCACTCTGGAGACATCATGCCCTCTGGGAATTCCCTAGACATTTCTCTGAGTTGAGAGTCAACTGCAGTCACACACCATCTAAACCAACCGCCCTTCCTTTATAACAGCAGCAGCAGGGGCCATGTTCCTTCCTACTAAATGCTCTTTAAATAACATGCGTCTGTCACTGTTTGTATGTTACAGGGGTCACACCACACACACACACACACACACACACACACACACACACACACACACACGTCACTGAGTTTTCTTTCCTTTTATGGCCCAATACAGAGAAACAGAATTTGAAGCACTCTCATATGCAGGTGACTCATTGGAAATGCTGCCCTAATCCACACCTCTCATTTGAAATACAAAACAAAGGGCAAAGCCACCGGGTCAGTAGGATTGGGAAGGCTCCACACTGCCGGCCCATTCCTGGCTTTACAGTGGCCTGGGGAAGCCAGTGACAGCTGTCACCTGAACCCAGACAGGCAAGAGAGTGGGCTCTCCTGGGCTTCTGTGACTATGGGAAAGTATCATGTTTGCTGTGCTTCGTTCTGTCCCACTCAG
Seq C2 exon
GTGTCTAAGGATGACCGCAGTGATGTAGAAAGCAGCTCAGAGGAAGATGAGACCACACACACGAACAACCTCTCTGGCAGCAGTTCCAGCAACGGTGCCAACTGCATGAACGGCCGCATGGGAGGCAGCCACTTGGCTGAGGAGCAGGGGACTTGTAAAGCTGCTGGCAACCTACACTTTGGGGCCTCCCCACGTATACACTCCTGTGACTAGAGGGACCGCCAGGCACTGAGGAGAATCTGAGAAACAAATGTTTTTGTGTTTTAAAGAAACTCTGCCATTTTGTATTTAATGCCCTGGTCCTTCAGTGACATCACTGGCTCTTTGTCTGTGTGTCTGTGCGTCTGTACATGTGCATCATGCATGTGGATGAGCGTCATCCACTAGGTTGGGCACAAGGCTGGATTACTAGTCAGTGTCTGGTCACTTCTGAATCACCTCCGGTCCAGCGTTCGCTGTATCTTGAGTTAAGCTGTCTCCCAACCAGCTGTGTCCTCTTTCCGTGGCTCTTGAGACTCTTCAGTTCCTGGTCCATGGAAGTCAGTGGTGCGGCCACTTGGCTCCAGCACTTGGAGACTGTTCTTTTGGAGGAGGAAGTAATTTTCACCTGATGGAACACTCTGGATAGACACCAGGATCACTGTAGCCACATGCCCCCTTCCTGCCACCCGACAGTGTCAGGGACAGCCACTGACGCCCTGCTGCTTATTCAATGGTACGCAGGGAGGGGAGGGGAGGGGAGGGTGAGCTGAGATTCGGAGAACAGCAACCACTGGTTGTGCTGTTAATGATTTTATACTATTGTTTATTCTTCTGTGATTAAAGTGTTTCAACCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990:ENSRNOT00000080109:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.443
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGAGATTATTGGGCC
R:
CGGTCCCTCTAGTCACAGGAG
Band lengths:
354-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]