DreEX0021076 @ danRer10
Exon Skipping
Gene
ENSDARG00000002365 | cers5
Description
ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
Coordinates
chr22:5728244-5734044:-
Coord C1 exon
chr22:5733938-5734044
Coord A exon
chr22:5732101-5732257
Coord C2 exon
chr22:5728244-5728900
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTGACGGTCTCAGGAT
3' ss Score
7.33
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
GCGGCAAAGTTAGCAAACTATGCCAAATACCAGCGTGTGTGTGACGTGGTGTTTGTGATATTCGGGATAATCTTCTTCGGGACGAGATTGATCATTTTCCCCTTCTG
Seq A exon
GATCCTGAACACGACTCTGTTTGAGAGCTGGCAGATCATCGGGCCGTACCCGTCCTGGTGGCTCTTCAACTTCTTGCTGCTGGTTCTGCAGGTGCTACACATCTTCTGGTCGTATCTGATCGCTCGCATCGCCTTCAAAGCCATCGTCAGGGGAAAG
Seq C2 exon
GTGTCCAAAGATGACCGCAGCGATATTGAAAGCAGCTCTGAGGAAGAAACTGAAACGTCAGGCAAAGAGCGACTCAAATCTGCCTCGCCGCGAGGAGAAAACGGCACTAACGGTCATTTTGGCTCCAAAACTTGGAGCCAAAACCATAGTGAATGGTGACAATTCGTCCTCGTGGCCTTCGCACAAAGAACTCCAGTCCCAGAAATATGGCGTCGGGACTAATTCCTCATCCCCATACCTCACTCCAACAACCAAAAACACCAACTACAACATCCTGCTGCGGGATTCCTGACACTCCATGGTGGCTTTTGAGGAGTTTTGTTTTGTTTTTTTCCATAAAGACTGTACGGCCACTATGAGAAGCTTGTGAAAGAGAGAAACGATTAAATTAGTGATGTTTGCATTCCCTCGTTTCCTGGTTTTGGGAGACGGTTTTTCCTGCTGGAGACTTTCCTCTTCAGATTTTAATGGTTGGATGTACTTGAGTTTCCACATGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002365-'9-12,'9-10,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.596
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTGTTTGTGATATTCGGG
R:
GAGTTCTTTGTGCGAAGGCCA
Band lengths:
256-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]