MmuEX6072535 @ mm10
Exon Skipping
Gene
ENSMUSG00000015714 | Cers2
Description
ceramide synthase 2 [Source:MGI Symbol;Acc:MGI:1924143]
Coordinates
chr3:95322127-95323599:+
Coord C1 exon
chr3:95322127-95322233
Coord A exon
chr3:95322320-95322473
Coord C2 exon
chr3:95322649-95323599
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACTTGCCCTTGAATCTGCAGGAT
3' ss Score
10.22
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCTGCCAAGATGTTTAACTACGCGGGATGGAAGAACACCTGCAACAACCTCTTCATTGTGTTCGCCATCGTTTTCATCATCACTCGGCTGGTTATCATGCCTTTCTG
Seq A exon
GATCCTACACTGCACGATGATATACCCACTGGAGCTCTACCCTGCCTTCTTTGGCTATTATTTCTTCAATTTTATGATGGCAGTGCTACAGATGCTCCATATCTTCTGGGCCTACTTCATTCTGCGTATGGCCCACAAGTTCATAACTGGAAAG
Seq C2 exon
CTGATAGAAGATGAACGCAGTGACAGAGAAGAAACAGAGAGTTCAGAGGGGGAGGAGACTGCAGCTGGGGCAGGAGCAAAGAGCCGGCTCCTAGCTAATGGCCACCCCATCCTCAATAACAATCATCCTAAGAATGACTGAACCATTGTCCTAGCTGCCTCCCACATCAATGCATGAGGCCAAGAAACTAGCCAAGCTTCCCTTTAGGGGCATTTGAGCTCTGGGGAGAAAGGATATGAGGAGTCTACACTGACCTTCCACTTCTTTTTTCACCCAGTTGCCTTTAAACCAGACTCTAAACAGCCTATCTCCAGGTAGAAAGGAGGCTTGGCCACATCCACATCCTGTTGAGAGACATAGTCTCATTTCCCTCTCTACCTTCTAAGCTACCCTTCTTGCTAATCCTTCTTCAGCTCTGAGGGTTGGAATCATAACTCACATTCCTCATTCCTAAGAATTTGGAGCTAGCTGTTTGCCTTTGACTCCCTGACTTCAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015714-'22-26,'22-24,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGCGGGATGGAAGAACAC
R:
GGCAGCTAGGACAATGGTTCA
Band lengths:
249-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types