BtaEX6015130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000099 | CERS2
Description
Bos taurus ceramide synthase 2 (CERS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034667]
Coordinates
chr3:19842075-19843638:+
Coord C1 exon
chr3:19842075-19842181
Coord A exon
chr3:19842308-19842461
Coord C2 exon
chr3:19842640-19843638
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTCCCCATCCCAAGGAT
3' ss Score
8.33
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TCAGCCAAGATGTTTAACTACGCGGGATGGAAAAACACCTGCAACAACATCTTCATCGTCTTCGCCATTGTCTTCATCATCACCCGACTGGTCATCCTGCCCTTCTG
Seq A exon
GATCCTGCACTGCACGCTGGTGTACCCACTGGAGCTCTATCCCGCCTTCTTTGGCTATTACTTCTTCAATTTCATGATGGGAGTGCTACAGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAG
Seq C2 exon
GTAGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGGGAGGAGGCTGCAGCTGGGGGAGGAGCAAAGAACCGGCCCCTGGCCAATGGCCACCCCATCCTCAACAACAACCATCGTAAGAATGACTGAACCATTGTCCCTGCTGCCCCTCAGATTAACGTATAAAGCCAAGGAAATACCCCACCCTCCCCACAGGGTCACTTTAAGCTCTGGGGAGAAGGAGAAAGCGAGAGGAGCGTGTTCTTCTCTGTGCCCCACCCCCTGCTACTGTCACCCAGTTGCCTTTAAACCAAATTCTTATCAGCCCATCTCCAGGAATGGGAGGTTGGCTATATCCTTTGTTGGGGGAGGGGGATTGGTCTTATTTTCCAAGTTGTCCTTTCTACTGATTTTGAGACCTTTCCTCAGTTCTGGGGGTGGGGGTTATAAGTCACATTCCTTACTCTTCAGAATCTGGCCCTGTCTGTCTGCCTTTGACTCCCTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000099-'21-17,'21-16,22-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATGGAAAAACACCTGCA
R:
CGTTAATCTGAGGGGCAGCAG
Band lengths:
257-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]