HsaEX0035425 @ hg38
Exon Skipping
Gene
ENSG00000143418 | CERS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:HGNC:14076]
Coordinates
chr1:150966162-150967202:-
Coord C1 exon
chr1:150966756-150967202
Coord A exon
chr1:150966476-150966629
Coord C2 exon
chr1:150966162-150966288
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTTGAATCCTCAGGAT
3' ss Score
9.61
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GATTTCAAGGAACAGATCATCCACCATGTGGCCACCATCATTCTCATCAGCTTTTCCTGGTTTGCCAATTACATCCGAGCTGGGACTCTAATCATGGCTCTGCATGACTCTTCCGATTACCTGCTGGAGGTCAGGCTTCCTCAAATCTAGAGACCCTGGTGCAGGTTCTTCTGTCCCTTTGGTTTTCTTTGGGAGGGAGGTGCGGGGTGGGAATTTGGAGGATGACATTCCTGGGACCAAGGAGGAGGGCACAGAGTCAGTGCTCCTAACTGGAGTGTACATATGAATGTACTCGAGGGAGTCAGGAGCCCATGATGATGGATGGGGGCTCTCTATGCAGTCAGCCAAGATGTTTAACTACGCGGGATGGAAGAACACCTGCAACAACATCTTCATCGTCTTCGCCATTGTTTTTATCATCACCCGACTGGTCATCCTGCCCTTCTG
Seq A exon
GATCCTGCATTGCACCCTGGTGTACCCACTGGAGCTCTATCCTGCCTTCTTTGGCTATTACTTCTTCAATTCCATGATGGGAGTTCTACAGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAG
Seq C2 exon
CTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGGGAGGAGGCTGCAGCTGGGGGAGGAGCAAAGAGCCGGCCCCTAGCCAATGGCCACCCCATCCTCAATAACAACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418-'26-30,'26-29,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.475
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGATGGGGGCTCTCT
R:
TATTGAGGATGGGGTGGCCAT
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development