GgaEX0000238 @ galGal3
Exon Skipping
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:66446-71023:-
Coord C1 exon
chr28:70917-71023
Coord A exon
chr28:70375-70531
Coord C2 exon
chr28:66446-66774
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAATTCTTTCTCTCTTGCAGAGT
3' ss Score
11.27
5' ss Seq
ACGGTATGA
5' ss Score
8.54
Exon sequences
Seq C1 exon
CCAACTAAGATATTCAATTACATGAAGTGGAAAAAAACTTGTGACAGCCTCTTTATGATCTTCTCAGCTGTTTTCCTCATCAGCCGCCTGGTCGTTTTCCCCTACAC
Seq A exon
AGTGCTCTATAACACCTACTACTACTCCATGGAGATATTCCAGCCCTTCTTTGGATACTACTTTGTGAATGCTCTCCTGATAACTCTACAGTTGCTTCACGTCTTCTGGTCCTGCCTCATTATTCATATGGTCTACAAGTTCATGCTCCAGGGCACG
Seq C2 exon
ATGGAAAAGGACATGAGAAGTGAAACAGAAGAGAGTGACGTGGATGAAGAAAGAGAAAACATGATGGAAAAGGAGAAAAATGGGATTGCACGTTTCAGCAATGTCACGAGCAGCAATTACATCCAGAGGAATGGGTCTGAGCCACTGAACAACAGAGCCCATCTCACCAATGGTCACGTAAAGGAAAGATAGCCTCTGTTCGTGTCTGTCATGAATCCGGTCCACCGTCTTTAGAAGCAGTTTTGCTTGTCGTATAGATATAAAAGATTGCAATTGCAGTATCATAACTGAATTCCTTTTTATTGTAAACAGAATTGTGTATGGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTTTCCTCATCAGCCG
R:
TGACAGACACGAACAGAGGCT
Band lengths:
253-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]