RnoEX0020313 @ rn6
Exon Skipping
Gene
ENSRNOG00000001072 | Cers4
Description
ceramide synthase 4 [Source:RGD Symbol;Acc:1309303]
Coordinates
chr12:4439750-4444290:-
Coord C1 exon
chr12:4444184-4444290
Coord A exon
chr12:4442003-4442159
Coord C2 exon
chr12:4439750-4441909
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGCCTCCTGCTTTAGGGT
3' ss Score
10.85
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGCTGTAAGATGCTCAACTATGCCCACTTTCAGCGAGGGTGCGATACTCTTTTCATCATCTTCTCCTTAGTCTTCTTCTACACACGCCTCGTATTCTTCCCCACCGA
Seq A exon
GGTCATCTACACTGCTGTGTTTGACTCAATCAAGAACTCAGGCCCCTTCTTTGGCTACTACTTCTTTATTGTGCTCCTGGGGATGCTACAGATTCTTCATGTGTACTGGTTCTGCCTCATCCTGCGCATGATCTGCAGTTTCCTGAGGAAGGGTCAG
Seq C2 exon
ATGAGAGAGGACATTCGTAGTGATGTGGAAGAATCAGACTCCAGTGATGACGAGGCAGTTTCTGAAGGTCCCCAGCTGAAGAATGGGATGGCTCGAGGGTCTAGAGCAGCCATTACCAATGGCCCGCGGAGCCGGGCAGCAGCTTGCCTGACCAATGGGCACACCCGGGCCACATAGACAACCGCAGATTGACGTTGAGGGGTTGCCTCCAGCATTGTGGATATTTAGATGCTGGACTGGTAACTCTGGGAGACAGGGAGGCCCTACCTTAAAGTAGGAAGAAGACTGGTGATCTGTTTCCCTTCTGTTCTTCTCACTTTATCCCTTTGAACAACTTGACAGAACCTGGGGGAGCAGTGGACTCTGCATCTGGCCAGAGCCACCCCCAGGCTATAGCTTGGGGGCTCTGGGGAGCCTTGGCTCCAAGGACCAATAAAACTTCAACAGTGACGAATTCTCTGCCGCAAAGCTTGAGTTCCCTTCACAGCTCTTCCTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001072-'18-20,'18-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCTACACACGCCTCGT
R:
GCAACCCCTCAACGTCAATCT
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]