BtaEX0008658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003434 | CERS4
Description
Bos taurus ceramide synthase 4 (CERS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001015520]
Coordinates
chr7:18161031-18163612:+
Coord C1 exon
chr7:18161031-18161137
Coord A exon
chr7:18162718-18162874
Coord C2 exon
chr7:18163120-18163612
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCCCGCCCACCCACCATAGGAT
3' ss Score
8.53
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCCAGTAAATTGTTCAACTACATGCACTGGCGGCGCATGTGCGACACTCTGTTCATCATCTTCTCGCTGGTTTTCTTCTACACTCGCCTTGTGCTCTTCCCCACCCG
Seq A exon
GATCCTCTATACCACTTTCTTCGAGTCCATTGGCAACTTCAGCCCCTTCTTCGGCTACTACTTCTTGAACATACTTCTGGTGATTCTACAGCTGCTGCATGTGTTCTGGTCTTGGCTCATCCTTTGCATGATCTACAGCTTCATAAAGAAAGGCCAG
Seq C2 exon
ATGGAGAAGGATGTTCGCAGTGACGTGGAGGAGTTAGACTCCAGCGATGGGGAGGCAGCCGAGGAGTGTCCTCAGATGAAGAATGGGGCGGCACAGCGGCCCGGAGCAGCCCCCACTGACGGCCCTCGGAGCCGGGCAGCCGGTCGCATGGTTAACCGGCATACACCAGCCACGTAGCCGGCCAGAGGACTGGCCGCGAGGGGGGCTGCCCCAGCGTCGGGGGCAGCTCTGATATGTGGGGCGGCTGGACTGCGGGATCTCGGGCAGACTTTGTGGAGACAAGGGAGGGCCCCAGGTGGCGCTGATGATCGGTCTCCAGCCCCTTCCTTCAACCCACCCTCCCACCTTCTCTGAACAACCAACAGAGCTGGGGGAAGAGGGGCGGCGGGCAGCTACAACGACACGCCAGCCCGCTAGCGCCACCTGCAGGCTGCAGCTGGCAACTGTGAAGAGCGCCGGGCGGAAAGGGGTCCAATAAACCTTGACCGGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003434_MULTIEX1-10/10=9-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.638
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACTACATGCACTGGCGG
R:
TATGCCGGTTAACCATGCGAC
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development