GgaEX0000238 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C668]
Coordinates
chr28:99392-104899:-
Coord C1 exon
chr28:104771-104899
Coord A exon
chr28:103855-104011
Coord C2 exon
chr28:99392-100254
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAATTCTTTCTCTCTTGCAGAGT
3' ss Score
11.27
5' ss Seq
ACGGTATGA
5' ss Score
8.54
Exon sequences
Seq C1 exon
GACTTCAAGGAGCAGATAGTCCATCATGCTGCAACCATCTTCCTGATCAGTTTCTCATACTGTGCCAATTACATCCGGATTGGGACACTGGTGATGGTGATTCATGATGCTTCTGATTGCTTCCTAGAG
Seq A exon
AGTGCTCTATAACACCTACTACTACTCCATGGAGATATTCCAGCCCTTCTTTGGATACTACTTTGTGAATGCTCTCCTGATAACTCTACAGTTGCTTCACGTCTTCTGGTCCTGCCTCATTATTCATATGGTCTACAAGTTCATGCTCCAGGGCACG
Seq C2 exon
ATGGAAAAGGACATGAGAAGTGAAACAGAAGAGAGTGACGTGGATGAAGAAAGAGAAAACATGATGGAAAAGGAGAAAAATGGGATTGCACGTTTCAGCAATGTCACGAGCAGCAATTACATCCAGAGGAATGGGTCTGAGCCACTGAACAACAGAGCCCATCTCACCAATGGTCACGTAAAGGAAAGATAGCCTCTGTTCGTGTCTGTCATGAATCCGGTCCACCGTCTTTAGAAGCAGTTTTGCTTGTCGTATAGATATAAAAGATTGCAATTGCAGTATCATAACTGAATTCCTTTTTATTGTAAACAGAATTGTGTATGGTCAGTGATATCTGAGGGGAGTTTTTGGTCTTTCTTCAACAAAAGCTTTCTATAGGTTGTAGCCTTGAGGAAAATAGAAAGGGATCAAAGTGGTTTGACTTGAATTAAACAGTACCAATTGTTAAATGTGCTAATCCTGAAAAACACTCAGAACAGTGGAACTTTGGCAATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATCATGCTGCAACCAT
R:
GCTCAGACCCATTCCTCTGGA
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]