DreEX6039040 @ danRer10
Exon Skipping
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1368032-1373218:+
Coord C1 exon
chr16:1368032-1368138
Coord A exon
chr16:1370506-1370659
Coord C2 exon
chr16:1370761-1373218
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGTGTGTTTCTCAGGAT
3' ss Score
11.27
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
TCAGCTAAGATGTTTAACTACGCCCGATGGAAGAACGCATGCAACTACATCTTCATCCTGTTTGCTGCCATCTTCATCGTCACACGCCTCATCATCTTCCCTTTCCG
Seq A exon
GATCATGTACTGTACGTGGGTGTATCCCGTGACGCTCTACCCTCCGTTCTTCGGATATTACTTCTTTAACGGTCTGCTGATGGTTCTGCTGTGTCTGCACATGTTCTGGGCTGCGCTGATCATACGCCTGGCCTTCCGCTTCCTCAGCAGCAAT
Seq C2 exon
TCATCAGTAGAAGACGAGCGATCTGATCGAGATGAGACGGACGAGTCTGAGGAGGAAGAAGAGTTGAAAAATGGAGAGATAAAGAAGAAGAACGGAGCAGCTCAGAACGGCCACGCCACATACAACAACAACCACTCGAAAACAGAGTGACGTCCTGAGAAAAACACACTCACAGTCACTGAGATCCGTCATCTCCTGAGGCAGAGCACTGAGAGCTGAGCACAGTTCATGAGCAGAGAAGGTGCTGTGTACACTACACACACACACTTACATACAAACATGCCTACACACATATATGCATACATACATACACACATACATACATATATACATACATACTCACACACACACACACACACACACACACACACACACACACACAGACTCTCCTCTGTCTGCTGGAGAAACACGGCCTCTACTGACGTCCACTCTCAGGAGCAGATCACCTGAAATCAGCAGCAGCATCAACACACCGGTGACGCCACTACAGGGATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCTTCATCGTCACACG
R:
GCCTCAGGAGATGACGGATCT
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]