RnoEX0020305 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196494479-196495904:+
Coord C1 exon
chr2:196494479-196494585
Coord A exon
chr2:196494672-196494825
Coord C2 exon
chr2:196494990-196495904
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACTTGCACTTAAATCCTTAGGAT
3' ss Score
8.58
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCTGCCAAGATGTTTAACTACGCAGGATGGAAAAACACCTGCAACAACCTCTTCATTGTCTTCGCCGTCGTTTTCATCATCACTCGACTGGTTATCATGCCCTTCTG
Seq A exon
GATCCTCCACTGCACAATGATATACCCACTGGAGTTCTACCCTGCCTTCTTTGGCTATTACTTCTTCAATTCCATGATGGTAGTGCTACAGATGCTCCATGTCTTCTGGGCCTACTTCATTGTGCGCATGGCCCACAAGTTCATAACTGGAAAG
Seq C2 exon
CTGGTAGAAGATGAACGCAGTGACAGAGAAGAAACAGAGAGTTCAGAGGGGGAGGAGGCTGCAGCTGGGGCAGGAGCAAAGAGCCGACTCCTAGCTAATGGCCACCCCATCCTCAATAACAACCATCCTAAGAATGACTGAACCGTTGTCCTAGCTGCCTCCCACATCAATACGCGAAGCCAAGAAACTAGCCAAGCTTCCCTGTAGGGGCATTTGAGCTCTGGGGAGAAAGGATATGAGGAGTGGTCTATGTTGACCTCCCTTCTTTTTTCACCCAGTTGCCTTTAAACCAGACTCTAAACAGCCGGTCTCCAGGTAGAAAGGAGGCTTGGCTGTATCCTGTTGAGACGGGACTGTCTGGTCTCATTTCCCTCTCTACCTTCCAAGCTACCCTTTCTCCTGCTAACCCTTCTCAGCTCTAAGGGTTGGAGTCATAACTCACATTCTTCATTCCTAAGAATCTGGAGCTAGCTGTTTGCCTTTGACTCCCTGACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATTGTCTTCGCCGTCG
R:
TGGCTAGTTTCTTGGCTTCGC
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]