MmuEX6034234 @ mm9
Exon Skipping
Gene
ENSMUSG00000008206 | Lass4
Description
LAG1 homolog, ceramide synthase 4 [Source:MGI Symbol;Acc:MGI:1914510]
Coordinates
chr8:4521174-4526079:+
Coord C1 exon
chr8:4521174-4521280
Coord A exon
chr8:4523354-4523510
Coord C2 exon
chr8:4523604-4526079
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTTCCCGCCTTAGGGT
3' ss Score
11.17
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGTTGTAAGATTCTCAACTATGCCCACTTTAGGCGAGGGTGCGATGCTCTCTTCATCATGTTTGCCTTAGTCTTCTTCTACACGCGCCTCATATTCTTCCCCACCCA
Seq A exon
GGTCATCTACACGTCTGTGTATGACTCCATCAAGAACTCGGGCCCCTTCTTTGGCTACTACTTCTTTATTGTGCTCTTGGTGATGCTACAGATTCTTCATGTGTACTGGTTCTGCCTCATCCTGCGCATGCTCTACAGTTTCCTGCATAAGGGTCAG
Seq C2 exon
ATGACAGAGGACATTCGTAGCGATGTGGAAGAACCAGACTCCAGTGATGACGAGCCAGTTTCTGAAGGTCCACAGCTGAAGAATGGGATGGCTCGAGGGTCTAGAGTAGCTGTTACCAATGGCCCGCGGAGCCGGGCAGCAGCATGCCTGACCAATGGGCACACCCGGGCCACATAGACAACCTTGGACTGATGTTGAGGGGTTGCCGCCAGCATTGTGAATATTCAGATGCTGGGCTGGTGATTCTGGGAGACAGGGAGGCCCTACCTCAAGGTAGGAAGAAGACTGATGATCTGTTTCCCTTCTGTTCCTCTCCCTTTATCCTTTTGAGCAGCTTGACAGAACCTGGGGGAGCAGTGGACTCTGCATCTGGCCTGAGCCAACCCCAGGCTGTAGCTTGGGGGCTGTGGGGAGCTTTGGCTCCAAGGACCAATAAAACGTCAACAGCGATGAATTCTCTGCGCCAGAGCTTAAGTTCCCTTCACAGCAGTTCCTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008206-'12-15,'12-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.345
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCGATGCTCTCTTCATC
R:
CCAAGGTTGTCTATGTGGCCC
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: