HsaEX0035438 @ hg19
Exon Skipping
Gene
ENSG00000090661 | LASS4
Description
ceramide synthase 4 [Source:HGNC Symbol;Acc:23747]
Coordinates
chr19:8322763-8327305:+
Coord C1 exon
chr19:8322763-8322869
Coord A exon
chr19:8326572-8326728
Coord C2 exon
chr19:8326814-8327305
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCCCCTGGCTGTAGGAT
3' ss Score
9.88
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCCTGTAAGATGGTCAACTACATGCAGTATCAGCAAGTGTGCGACGCTCTCTTCCTCATCTTCTCCTTTGTCTTCTTCTACACCCGACTGGTCCTCTTTCCCACCCA
Seq A exon
GATCCTCTACACCACATACTACGAGTCCATCAGCAACAGGGGCCCCTTCTTCGGCTACTACTTCTTCAACGGGCTTCTGATGTTGCTGCAGCTGCTGCACGTGTTCTGGTCTTGCCTCATTCTGCGCATGCTCTATAGCTTCATGAAGAAGGGCCAG
Seq C2 exon
ATGGAGAAGGACATTCGTAGTGATGTAGAAGAATCAGACTCCAGTGAGGAGGCGGCGGCGGCCCAGGAACCTCTGCAGCTAAAGAACGGGGCAGCTGGAGGGCCCAGGCCAGCCCCCACTGATGGCCCTCGGAGCCGGGTGGCCGGGCGTCTGACCAACAGGCACACAACAGCCACATAGCCGGGCGGGGCTGGCTGTAAGGGGTTGCCCCCCCGCCAGTGCCTTGGATATTTCTGGGGTGACTGGACTGGCGCCCCTGGGCCACCTTTCTGGAGACAGGGAGGGCCCCACCCGGGGTGGGTGGGAAGGCTGATGATCTGTCTCCAGCCCCTTCCTTCTGCCCACCCACCCTTCTTCCCTCTGGGCAACTGGACAGATCTGGGAGCCAGCAGCTGGATGCTGTGGCTGGCCAGAGACACCTCCAGGCTGTGGCCTGGGGGCTGGGGGGAGCCCCAGGCTGAAAAGGGTCCAATTAAAACAAATGGAGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090661_MULTIEX2-5/5=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.695
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(10.0=21.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGTGCGACGCTCTCTTC
R:
TTGTGTGCCTGTTGGTCAGAC
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)