GgaEX7011167 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NRZ0]
Coordinates
chr28:546550-549556:+
Coord C1 exon
chr28:546550-546656
Coord A exon
chr28:547194-547338
Coord C2 exon
chr28:549482-549556
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTCTCTCCCACAGCAC
3' ss Score
12.42
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
TTGGCCAAGGTTCTCCATTACATGAAATGGAAGCGGGTCTGCGAAGCGGTCTTTATTGTTTTCGCTGTGGTGTTCATCAGCTCCCGCCTTGTCATTTTCCCACTAAT
Seq A exon
CACATACTATTACTACGTGACAAAATTTGAGATGTTCTTCCTAAGCTGCCTGATAAACGCTTTCCTGATGATCCTGCAGCTGTTGCACATTTTCTGGTCCTATCTCATCCTCCGGATGACCTTCAATGTCATCCTGTATGGTGCG
Seq C2 exon
AAAAAAAAAGATGCAAGAAGTGACACCGAGGAAAGCGATGGGAGCGAAGCAGAGGATGCAGCAAAGAACGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.4=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(20.0=77.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGGTTCTCCATTACA
R:
ACTCGTTCTTTGCTGCATCCT
Band lengths:
179-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]