DreEX0021050 @ danRer10
Exon Skipping
Gene
ENSDARG00000013704 | cers2a
Description
ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
Coordinates
chr19:8856132-8858909:-
Coord C1 exon
chr19:8858803-8858909
Coord A exon
chr19:8858407-8858560
Coord C2 exon
chr19:8856132-8856704
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTGCGTGTCTTTCAGGAT
3' ss Score
11.38
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TCTGCCAAGATGTTCAACTACGCCGGCTGGAGGAAAACCTGCAACTACATATTCATCATCTTCGCTGCCATCTTCATCATCACCAGACTCGTCATCTTCCCTTTTTG
Seq A exon
GATCCTGCATTGCACCTGGGTGTATCCGGTGACTGTTTATCCTCCGTTTTTTGGGTATTACTTCTTCAACGGGCTGCTGTTTGTGCTGCAGTGTCTGCACATCTTCTGGGCCGTACTCATCCTGCGTATGGCTATCAAATTTTTGCCAGGCAAT
Seq C2 exon
AATATAGTGGAGGACGAAAGGAGCGACCGAGAAGAAACAGACTCTGAGGATGATGATGAGGAAGACGAGAAGGACAGGAGAGTGAAAAATGGACCAGTCCTGAACGGCCACTCGCCACTAAACAACAACCATCACCGTAAGACTGAGTGATGAGAGAAGAGGTACAACACTAGCCTTACAGACCAACAGACTCATGCTGACGGATCCAAAACACACAAACACGCACCATTCTAATGCTGTGGAACGGACAAACTTCCAGAAAGAGGATTGGTGTAACCCTTTCCCCACATTTAAAACACTATTAACAGGCCCCATGTTTAAATAATGTTGTTTTGTTGATGGTTGCCTTGCTTTACTGGTAATATTTCCTCCAGTTTATTCGATCTCAGTTCCTTTATGTTGTTTTGGGCATCGCACACACACACACACACACACACTAGAAATCATATTTCATTCTTTCTGGTCAGATTTCTCAGAATCCCTCAGTATTTGAGTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013704-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.653
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCATCTTCATCATCACCA
R:
TGGATCCGTCAGCATGAGTCT
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]