BtaEX0008663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044179 | CERS6
Description
Bos taurus ceramide synthase 6 (CERS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001193132]
Coordinates
chr2:27407917-27463782:-
Coord C1 exon
chr2:27463676-27463782
Coord A exon
chr2:27411146-27411302
Coord C2 exon
chr2:27407917-27408069
Length
157 bp
Sequences
Splice sites
3' ss Seq
TACTTTCTCCTTTTCCTTAGGGT
3' ss Score
10.78
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGCCAAAATGGCAAATTACGCCAAGTTTCAGAAAATTTGTGATCTCCTGTTTGTTATGTTTGCCATGGTTTTTATCACCACACGACTGGGTGTATTTCCTCTCTG
Seq A exon
GGTGTTAAATACCACATTATTTGAAAGTTGGGAGATTGTTGGACCTTACCCTTCCTGGTGGGTTTTTAACCTACTGCTGTTGGTAATACAAGGCTTGAACTGCTTCTGGTCTTACTTGATCGTAAAAATAGCTTGCAAAGCTATTTCAAAAGGCAAG
Seq C2 exon
GTGTCCAAGGATGATCGAAGTGATATTGAGTCTAGCTCAGATGAGGAGGACTCAGAACCTCCAGGAAAGAACCCCCATACTGCGACCACCACCAATGGGACCAGTGGTACCAACGGGTATCTCCTCACTGGCGCTTGTGCCATGGATGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044179_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.530
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATTACGCCAAGTTTCAGA
R:
CACAAGCGCCAGTGAGGAGAT
Band lengths:
234-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development