BtaEX0008664 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044179 | CERS6
Description
Bos taurus ceramide synthase 6 (CERS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001193132]
Coordinates
chr2:27407917-27411302:-
Coord C1 exon
chr2:27411146-27411302
Coord A exon
chr2:27410565-27410588
Coord C2 exon
chr2:27407917-27408069
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGCCCACCTGGAAGTCT
3' ss Score
1.03
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTGTTAAATACCACATTATTTGAAAGTTGGGAGATTGTTGGACCTTACCCTTCCTGGTGGGTTTTTAACCTACTGCTGTTGGTAATACAAGGCTTGAACTGCTTCTGGTCTTACTTGATCGTAAAAATAGCTTGCAAAGCTATTTCAAAAGGCAAG
Seq A exon
TCTGGGAAGTGGAACCCCTTACAT
Seq C2 exon
GTGTCCAAGGATGATCGAAGTGATATTGAGTCTAGCTCAGATGAGGAGGACTCAGAACCTCCAGGAAAGAACCCCCATACTGCGACCACCACCAATGGGACCAGTGGTACCAACGGGTATCTCCTCACTGGCGCTTGTGCCATGGATGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044179_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.530
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061640fB1665
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGAACTGCTTCTGGTCT
R:
GTCCTCCTCATCTGAGCTAGACT
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development