MmuEX0026173 @ mm10
Exon Skipping
Gene
ENSMUSG00000027035 | Cers6
Description
ceramide synthase 6 [Source:MGI Symbol;Acc:MGI:2442564]
Coordinates
chr2:69105003-69114282:+
Coord C1 exon
chr2:69105003-69105159
Coord A exon
chr2:69105743-69105766
Coord C2 exon
chr2:69108442-69114282
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGCCATCCTGGAAGGCT
3' ss Score
4.45
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTGTTGAATACCACATTATTTGAAAGTTGGGAGATCGTCGGACCCTACCCTTCCTGGTGGGTTTTTAACCTGCTGCTCTTGTTACTACAAGGGTTGAACTGCTTCTGGTCTTACCTGATTGTAAAAATAGCTTGCAAAACTGTTTCAAAAGGCAAG
Seq A exon
GCTGGGAAGTGGAACCCTTTGCAT
Seq C2 exon
GTATCCAAGGATGACCGGAGTGACATTGAATCTAGCTCAGATGATGAGGACTCAGAGCCTCCAGGGAAGAAACCACACTCTTCAACAACCACCAACGGAACCAGCGGTACCAATGGGTACCTCCTCACTGGTCCTTGTTCCGTGGATGATTAACTACCCAAAACTATAAGTTCTGAACAAAGGGAACTGTTTGTTCCTGGAAGTATTTAATAAGTTGCAAATGCAGTTCCTTTCATGATATCTCATCACCAGAGACAAAAAATTAGGATTCTTGGAGCATTCTGAATAGTGTACTGCCATGTGTCCTGTCTGTGAATGAAGAAATCCATTATTTCTATGTAGGCATGCTGTATGTAACTGACACAGGGAACAGTATTTGCATTTGTCTTAGGATATTATTTATTTTTTTATTTGTTTGTAAATCTGTGGACAAACGAGGATTCCTTCACTCCTTTCATTCTCTGGGCTCGTGATTGACAGTAAGGATGTCCTGTCTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027035-'35-23,'35-22,36-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.550
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTGCTCTTGTTACTACA
R:
TCACTCCGGTCATCCTTGGAT
Band lengths:
112-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types