DreEX0021086 @ danRer10
Exon Skipping
Gene
ENSDARG00000053583 | cers6
Description
ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
Coordinates
chr9:49172637-49182471:-
Coord C1 exon
chr9:49182315-49182471
Coord A exon
chr9:49181647-49181670
Coord C2 exon
chr9:49172637-49179927
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTCATCGCTGCGACTAAAGGCA
3' ss Score
-0.05
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GATCTTGAACACCACAGTGTTTGAGAGCTGGGAGATCATAGGCCCGTACCCGTCCTGGTGGCTCTTTAACGGACTGCTCGTTCTTCTTCAGGCGCTGCACACCTTCTGGTCATATCTAATAGTGCGCATCGCCTGCCGGGCCATTTCCAGAGGAAAG
Seq A exon
GCAGGAAAATGGAATCCTTTACAT
Seq C2 exon
GTGTCAAAGGACGACCGCAGTGACATTGAGTCGAGCTCTGACGAAGACGAGCTTCATCCTCCGTTGCAGAAACATCACACTAACGGGACCAACGGGGCCCACGGCACCAACGGCTACCTGTCCTCGTCCCTGTGTCCAGACGAACACTAACTAGCCGGACGTTTCCCGGCTCCCAGCTGCATCACCTCCGTTGTGTCAAATCATGTATGAACATTACCAGGCCCGTACTGGAACTTCAATAATGTGAATGCGGTTTGTTTTCGGTCGGTCGCTTTTTTTTCCCACCGTTTTCCCCCTGATGTTTTGTGTTCCGTTCGTTTGCTTTTGTTTGTGGCCATTTGTAATGGAAGCACCTTTTAGATTGAGCGCGGCTCACTCTTTTGGTTTCGAGCAGATGAATGAAAGCGTTATTTCTTTCATAATCACGTGAGCATGCTCCTGCTGCTGCGGTCATGTGTTCTGGCATCATGGGAATAGTAGTTTTCTTGGATTAGTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053583-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.490
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTTCTTCTTCAGGCGCTG
R:
CTCGACTCAATGTCACTGCGG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]