GgaEX0016316 @ galGal3
Exon Skipping
Gene
ENSGALG00000010902 | E1C4X9_CHICK
Description
NA
Coordinates
chr7:20409619-20415469:-
Coord C1 exon
chr7:20415313-20415469
Coord A exon
chr7:20414465-20414488
Coord C2 exon
chr7:20409619-20411236
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTGCTGCATTGGAAGGCT
3' ss Score
2.02
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GATATTAAACACTACATTGTTTGAACTGTATGAAGCTCTGGGCAATTTTCCTGCCTTGTGGGTCTTCAACGTGCTGCTTGTGGTTCTACAAATTCTGCACTATTTTTGGTCTTATCTAATAATAAAGGCAGCCTACAAAGCTATTTCAAAGGGCAAG
Seq A exon
GCTGGAAAGTGGAACCCCTTGCAT
Seq C2 exon
GTAACAAAGGATGACCGAAGTGATATTGAGTCAAGCTCAGATGAGGAAGAAACAGTACCTCGTTCAAAGACCCTGCACAGCACTATCACCACTAATGGGACTGGTGGTGCCAATGGGACAAACGGGTATCTTACTGGTAGCACATGCTCAGAGGAGCATTAATCTTTCAGTGTCACAAGACATAAACAGGATGAACTGTTTGCTACTGTAAGTAAATTAGAAGTTGTGAATGCGGTTTCTTCATATATCTCAGCATCAAAAAAAAAATTAGGAGTATCAAAGCATTCTGATAGTGCACTGCCATACTCCCTGTTTGTGAATGAAGACGACACATCATTCTGTATACGTAGGTAGGCATGCTGTATGTGTATGTAATTGACACAATGGGAGCAGTATTTTCACTTGTACCATCTTTGAAATATTATTTATTCTGTATTCTTTCTGGGAACTTCTGGACAAAAGGGAACATCCATTCTCAAACTTTATCTCTTGGGATTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.519
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGCCTACAAAGCTATTTCA
R:
TGTGCAGGGTCTTTGAACGAG
Band lengths:
111-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]