RnoEX0020329 @ rn6
Exon Skipping
Gene
ENSRNOG00000024595 | Cers6
Description
ceramide synthase 6 [Source:RGD Symbol;Acc:1561599]
Coordinates
chr3:55334145-55338445:+
Coord C1 exon
chr3:55334145-55334301
Coord A exon
chr3:55334889-55334912
Coord C2 exon
chr3:55337602-55338445
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGCCATCCTGGAAGGCC
3' ss Score
4.63
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTGTTGAATACCACATTATTTGAAAGTTGGGAGATCGTTGGACCGTACCCATCCTGGTGGGTTTTTAACCTGCTGCTGTTGTTACTACAAGGGTTGAACTGCTTCTGGTCTTACCTGATTGTAAAAATAGCTTGCAAAACTGTTTCAAAAGGCAAG
Seq A exon
GCCGGGAAGTGGAACCCTGTACAT
Seq C2 exon
GTGTCCAAGGACGACCGGAGCGACATTGAATCTAGCTCAGATGATGAGGACTCGGAGCCTCCAGGAAAGAAACTACACTCTTCGACAACCACCAACGGAACCAGCGGTACCAACGGGTACCTCCTCACTGGCCCTTGCTCCATGGATGATTAATTACCCAAAACTATAAGTTCTGAACAAAGGGAACTGTTTGTTCCTGGAAGTATTTAATAAGTTGCAAATGCAGTTCCTTTCATGATATCTCATCACCAGAGACAAAAGTTAGGATTCTCAGAGCGTTCTGAATAGTGTACTGCCATGCGTCCTGTCTGTGAATGAAGAACTCCCATTCTTTCTGTGTAGGCATGCTGTATGTAACTGACACAAGGGAACGGTATTTGCATTTGTCTTAGGATATTATTTATTTTTTTATTTGTTTGTAAATCTGTGGACAGAGGAGGATCCCCTCACTCCTTTTATTCTCTGGGCTCATGATTGGCAGTAAAAATGTCCCATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024595-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGTTGAACTGCTTCTGGT
R:
AGATTCAATGTCGCTCCGGTC
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]