RnoEX0020328 @ rn6
Exon Skipping
Gene
ENSRNOG00000024595 | Cers6
Description
ceramide synthase 6 [Source:RGD Symbol;Acc:1561599]
Coordinates
chr3:55294482-55334912:+
Coord C1 exon
chr3:55294482-55294588
Coord A exon
chr3:55334145-55334301
Coord C2 exon
chr3:55334889-55334912
Length
157 bp
Sequences
Splice sites
3' ss Seq
GGCTTTCTTCTCCTCCTCAGGGT
3' ss Score
9.98
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCTGCCAAAATGGCAAATTATGCCAAATTTCAGAAAATGTGTGATCTCCTGTTTGTCATGTTTGCTGTGGTTTTTATCACCACACGGCTGGGCATATTTCCTCTCTG
Seq A exon
GGTGTTGAATACCACATTATTTGAAAGTTGGGAGATCGTTGGACCGTACCCATCCTGGTGGGTTTTTAACCTGCTGCTGTTGTTACTACAAGGGTTGAACTGCTTCTGGTCTTACCTGATTGTAAAAATAGCTTGCAAAACTGTTTCAAAAGGCAAG
Seq C2 exon
GCCGGGAAGTGGAACCCTGTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024595-'15-18,'15-17,17-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCCAAATTTCAGAAAATGTGTG
R:
ATGTACAGGGTTCCACTTCCC
Band lengths:
114-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]