GgaEX0016320 @ galGal4
Exon Skipping
Gene
ENSGALG00000010902 | CERS6
Description
ceramide synthase 6 [Source:HGNC Symbol;Acc:HGNC:23826]
Coordinates
chr7:18442947-18461710:-
Coord C1 exon
chr7:18461604-18461710
Coord A exon
chr7:18447185-18447341
Coord C2 exon
chr7:18442947-18443108
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTTTCTCTTCTAGGAT
3' ss Score
14.63
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGCCAAAATGGCAAACTATTGCAAGTGTCAAAAACTGAGTGACCTTCTGTTCCTTACGTTTGCCATTGTCTTCATTGTCAGTAGGCTTGGCATATATCCTTTATG
Seq A exon
GATATTAAACACTACATTGTTTGAACTGTATGAAGCTCTGGGCAATTTTCCTGCCTTGTGGGTCTTCAACGTGCTGCTTGTGGTTCTACAAATTCTGCACTATTTTTGGTCTTATCTAATAATAAAGGCAGCCTACAAAGCTATTTCAAAGGGCAAG
Seq C2 exon
GTAACAAAGGATGACCGAAGTGATATTGAGTCAAGCTCAGATGAGGAAGAAACAGTACCTCGTTCAAAGACCCTGCACAGCACTATCACCACTAATGGGACTGGTGGTGCCAATGGGACAAACGGGTATCTTACTGGTAGCACATGCTCAGAGGAGCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.491
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGTGTCAAAAACTGAGTGAC
R:
GCATGTGCTACCAGTAAGATACCC
Band lengths:
234-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]