GgaEX0016320 @ galGal3
Exon Skipping
Gene
ENSGALG00000010902 | E1C4X9_CHICK
Description
NA
Coordinates
chr7:20411075-20429838:-
Coord C1 exon
chr7:20429732-20429838
Coord A exon
chr7:20415313-20415469
Coord C2 exon
chr7:20411075-20411236
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTTTCTCTTCTAGGAT
3' ss Score
14.63
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGCCAAAATGGCAAACTATTGCAAGTGTCAAAAACTGAGTGACCTTCTGTTCCTTACGTTTGCCATTGTCTTCATTGTCAGTAGGCTTGGCATATATCCTTTATG
Seq A exon
GATATTAAACACTACATTGTTTGAACTGTATGAAGCTCTGGGCAATTTTCCTGCCTTGTGGGTCTTCAACGTGCTGCTTGTGGTTCTACAAATTCTGCACTATTTTTGGTCTTATCTAATAATAAAGGCAGCCTACAAAGCTATTTCAAAGGGCAAG
Seq C2 exon
GTAACAAAGGATGACCGAAGTGATATTGAGTCAAGCTCAGATGAGGAAGAAACAGTACCTCGTTCAAAGACCCTGCACAGCACTATCACCACTAATGGGACTGGTGGTGCCAATGGGACAAACGGGTATCTTACTGGTAGCACATGCTCAGAGGAGCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902-'9-11,'9-8,10-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.519
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGTGTCAAAAACTGAGTGAC
R:
GCATGTGCTACCAGTAAGATACCC
Band lengths:
234-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]