MmuEX0026172 @ mm10
Exon Skipping
Gene
ENSMUSG00000027035 | Cers6
Description
ceramide synthase 6 [Source:MGI Symbol;Acc:MGI:2442564]
Coordinates
chr2:69071332-69114282:+
Coord C1 exon
chr2:69071332-69071438
Coord A exon
chr2:69105003-69105159
Coord C2 exon
chr2:69108442-69114282
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTCTCCTCCTCAGGGT
3' ss Score
11.45
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTGCCAAAATGGCAAATTACGCCAAATTTCAGAAAATGTGTGATCTCCTGTTTGTCATGTTTGCCGTGGTTTTTATCACCACACGGCTGGGCATATTTCCTCTCTG
Seq A exon
GGTGTTGAATACCACATTATTTGAAAGTTGGGAGATCGTCGGACCCTACCCTTCCTGGTGGGTTTTTAACCTGCTGCTCTTGTTACTACAAGGGTTGAACTGCTTCTGGTCTTACCTGATTGTAAAAATAGCTTGCAAAACTGTTTCAAAAGGCAAG
Seq C2 exon
GTATCCAAGGATGACCGGAGTGACATTGAATCTAGCTCAGATGATGAGGACTCAGAGCCTCCAGGGAAGAAACCACACTCTTCAACAACCACCAACGGAACCAGCGGTACCAATGGGTACCTCCTCACTGGTCCTTGTTCCGTGGATGATTAACTACCCAAAACTATAAGTTCTGAACAAAGGGAACTGTTTGTTCCTGGAAGTATTTAATAAGTTGCAAATGCAGTTCCTTTCATGATATCTCATCACCAGAGACAAAAAATTAGGATTCTTGGAGCATTCTGAATAGTGTACTGCCATGTGTCCTGTCTGTGAATGAAGAAATCCATTATTTCTATGTAGGCATGCTGTATGTAACTGACACAGGGAACAGTATTTGCATTTGTCTTAGGATATTATTTATTTTTTTATTTGTTTGTAAATCTGTGGACAAACGAGGATTCCTTCACTCCTTTCATTCTCTGGGCTCGTGATTGACAGTAAGGATGTCCTGTCTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027035-'30-23,'30-20,35-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.550
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTCATGTTTGCCGTGGT
R:
ACAGTTCCCTTTGTTCAGAACT
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types