DreEX6064192 @ danRer10
Exon Skipping
Gene
ENSDARG00000036337 | cers3b
Description
ceramide synthase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-32]
Coordinates
chr18:7364083-7367033:+
Coord C1 exon
chr18:7364083-7364189
Coord A exon
chr18:7364270-7364423
Coord C2 exon
chr18:7366728-7367033
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTGGTGTGTGCAGGCT
3' ss Score
8.27
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TCTGCTAAAATGTTCAATTACGCCGGATGGGAGACGACCTGTAACAGTGTCTTTGTGGTGTTCGCGCTGGTCTTCATGGTAACCAGACTAATTATCTTCCCTTTCTG
Seq A exon
GCTGATTCACTGTACGTGGGTTTATCCTCTGGACCAGTTTGAACCCTTTTTCGGCTATTATTTCTTTAACGCCATGCTTATGGTGCTGCTGTTTTTGCACGTGTTCTGGGCCTCCCTCATCCTCCGCATGGTCAAAAAGTTTCTCTTTGGGAAT
Seq C2 exon
CTGAAGGGTGATGAGCGCAGTGATGAAGAGGAGGATGAGGGATCTGAGGAAGAATACACACATGCATACACTAATGGATCTGGGAATGGATTGTCTAATGGCCATTGACACAAATGCAGATCTTCCACAAATAGCCCTTTTGATGCCATGCATGCATATATGTCCATATTGGACACGTGATTCATCTGTGAACTTTTGTATAGCTTTTTATATTAAAGTTTGTACATGTACAGATATTATGGAAGAAAATCTATACAAATTATCACAAGAGTTAAAAGACATTTAAAAATTAGATAGTAGATCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036337-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.457
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAATTACGCCGGATGGG
R:
TGCATGGCATCAAAAGGGCTA
Band lengths:
249-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]