DreEX0021070 @ danRer10
Exon Skipping
Gene
ENSDARG00000018619 | cers4b
Description
ceramide synthase 4b [Source:ZFIN;Acc:ZDB-GENE-110719-2]
Coordinates
chr2:56232608-56235855:-
Coord C1 exon
chr2:56235749-56235855
Coord A exon
chr2:56235506-56235662
Coord C2 exon
chr2:56232608-56233013
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTTTGTGCTCAGGAT
3' ss Score
10.12
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCTGCCAAGATGTTTAACTACGCCGGCTGGAAGAAAACCTGCGACTCCTTATTTGTGATCTTCGCTGCTGTTTTCCTGGTGACTCGACTGCTGGTGTTTCCTAGCAA
Seq A exon
GATCATCTACACCACTCTGGTTTTGTCGATGGAGGTGTTTGAGCCGTTTCTGGGTTATTATTTCTTCAATGCGTTGCTGTTGGTGCTGCAGGCGCTGCACATTTACTGGGCTTACTTAATCCTCAGGATGGTCTACAAGTTCCTCTTCTTGGGGAAA
Seq C2 exon
CTGGACAAAGACGAGCGCAGTGATGTGGAAACTGAGCCAGAAGAGGAAGAAGAAGAGGAAAAAGAGGAAGAAGAGGAAGAGCAGAGGAGCTGGAGGAAGAGGAAGGTGGTGCTGGACTCCCGCCGGGCCATGCTGAGCTCCAGCTGCGTTCTCAATAACCTCACCCAGCAGAAAGCAGACGCTCAAAGACGACCCAAAGCCAGATAGCACACACAGATAACCCAACATCAACATCATCAACATCATCGTTCAGTCTAACATCAGTTTCCAGATCCAAGCACTACTAAAAATAAATAATCTCAACTGAAACATGACGAGAGGGCGGGACACATATAGCTCCTCCCCTAGTTTTTAATCACAGCTCTGCCAGTGAGAGTGGTCGAGCTCAAGCTCATCAAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018619-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.412
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2),PF103514=Apt1=PU(41.0=90.6)
C2:
PF103514=Apt1=PD(57.3=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGTTTTCCTGGTGACT
R:
GCTATCTGGCTTTGGGTCGTC
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]