RnoEX0020310 @ rn6
Exon Skipping
Gene
ENSRNOG00000013823 | Cers3
Description
ceramide synthase 3 [Source:RGD Symbol;Acc:1564356]
Coordinates
chr1:127738924-127781017:+
Coord C1 exon
chr1:127738924-127739030
Coord A exon
chr1:127751900-127752053
Coord C2 exon
chr1:127779270-127781017
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTCTCACCTGTTTCCCACAGGAT
3' ss Score
10.61
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TCTGCTAAGATGTTTTCCTATGCTGGATGGAAGCAAACCTGTAATACCCTGTTCTTCATCTTCGCCATCGTGTTCTTCATTAGCCGATTCATTATATTTCCGTTCTG
Seq A exon
GATTCTGTACTGCACCCTGATCCTGCCTTTGCACTATCTCGAGCCCTTCTTCTCCTACATCTTCCTCAACCTCCAGCTCATGATCCTTCAGGGCCTTCACATTTACTGGGGTTACTTAATCCTGAAGATGCTCAACAGATGCATATTCACACAG
Seq C2 exon
AACATCCAGGATGTGAGGAGTGACAACGAAGAGGAAGAAGATGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGAACACCAAAGGCAAAGAGACAGAGTATTTGAAGAATGGCCTTGGGACCAACAGGCATCTCATTCCCAATGGTCAGCATGGCCGTTAGCTTGAAGCACAGTGTGCTGCCAGGACCTTGGGGGCCTGAACTGCTCCCCTATCCACTGCTGTGGACCCACAGAGACCCCATTTTGCCTTTTATTTTATTTTATTTTATTTTATTGAGATGGAGTCTCCTATGTTGCTCAAGGTGGCCCCCAACTCAGTCATCCTGCCTGTGATAAGTGTTAGAAGGTGGATGCCAGTGGATGGCCCAGCAGCCCAGGCTGCTGGAGTGCTCAGAGATTTCTCCAGGCAGGGTCAGTTCTTGTTGTGTTTCCCCCATCCAGAACCAGCTGAGATGCTTCTCTGCACAGGGCCTCTGAGGGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013823-'15-19,'15-11,17-19
Average complexity
C1
Mappability confidence:
77%=100=62%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.655
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8),PF0389611=TRAP_alpha=PU(38.3=59.6)
C2:
PF0389611=TRAP_alpha=PD(59.3=81.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATGGAAGCAAACCTGT
R:
GCCATGCTGACCATTGGGAAT
Band lengths:
257-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]